planemo tool_init should wrap $input_file in double quotes#98
Merged
jmchilton merged 1 commit intogalaxyproject:masterfrom Mar 9, 2015
Merged
planemo tool_init should wrap $input_file in double quotes#98jmchilton merged 1 commit intogalaxyproject:masterfrom
jmchilton merged 1 commit intogalaxyproject:masterfrom
Conversation
I was reading the writing a tool docs for v0.6.0 https://planemo.readthedocs.org/en/latest/writing.html and noticed the command string template did not double quote the filenames: ``` <command><![CDATA[ seqtk seq -a $input1 > $output1 ]]></command> ``` This *untested* change attempts to do that.
Member
|
Awesome, thanks for the fix. |
jmchilton
added a commit
that referenced
this pull request
Mar 9, 2015
planemo tool_init should wrap $input_file in double quotes
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I was reading the writing a tool docs for v0.6.0 https://planemo.readthedocs.org/en/latest/writing.html and noticed the command string template did not double quote the filenames:
This untested change attempts to do that, and ought to give: