Initial version of sars-cov-2 variant-reporting workflow#23
Initial version of sars-cov-2 variant-reporting workflow#23mvdbeek merged 7 commits intogalaxyproject:mainfrom
Conversation
|
This one is failing because planemo doesn't load the "built-in" tools, like |
|
Although maybe that's not right, planemo should load distro tools: https://github.com/galaxyproject/planemo/blob/7f27dc0f9feca7ce172f1d0f9b32cd56c667607b/planemo/galaxy/config.py#L512 |
|
OK, for posterity, planemo was loading cat1, but only version 1.0.0, while the workflow specified version 2.0.0. Now 2.0.0 is specific to 21.01, while we were testing against master (which is release 20.09 currently). galaxyproject/planemo#1146 also loads version 2.0.0 on newer Galaxy, but for now I've downgraded to 1.0.0 in 218f0be, which is available in all galaxy instances, including 21.01 and newer |
…g max_num_jobs This should recapitulate the error seen when running workflow tests against galaxyproject/iwc#23.
…g max_num_jobs This should recapitulate the error seen when running workflow tests against galaxyproject/iwc#23.
No description provided.