Skip to content

New marker collection: Gandotra et al 2020#68

Merged
standage merged 18 commits intomasterfrom
gandotra2020
Jan 4, 2021
Merged

New marker collection: Gandotra et al 2020#68
standage merged 18 commits intomasterfrom
gandotra2020

Conversation

@standage
Copy link
Member

This update introduces a new marker collection into MicroHapDB. It includes 90 markers, most of which are in situ modifications of existing markers using the same marker name...sigh. I've replaced KK with KKCS and NK with KNCS in the marker names for this collection to avoid confusion with the marker definitions already present in the database.

Closes #57.

@standage standage added the datasources References to existing data sources or proposals for new sources label Sep 17, 2020
@standage
Copy link
Member Author

Still to be done:

  • add README documentation for this data source
  • see about including frequency data

@codecov-io
Copy link

codecov-io commented Oct 14, 2020

Codecov Report

Merging #68 into master will not change coverage.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff            @@
##            master       #68   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files            8         8           
  Lines          220       220           
  Branches        35        35           
=========================================
  Hits           220       220           
Impacted Files Coverage Δ
microhapdb/retrieve.py 100.00% <ø> (ø)
microhapdb/cli/frequency.py 100.00% <100.00%> (ø)
microhapdb/cli/marker.py 100.00% <100.00%> (ø)
microhapdb/cli/population.py 100.00% <100.00%> (ø)

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 0c37902...d98d405. Read the comment docs.

@standage standage merged commit 2d6d791 into master Jan 4, 2021
@standage standage deleted the gandotra2020 branch January 4, 2021 21:00
standage pushed a commit that referenced this pull request Sep 11, 2024
Minor update that enables the use of panel files in `mhpl8r sim` and resolves population identifiers in `mhpl8r prob`.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

datasources References to existing data sources or proposals for new sources

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Gandotra et al. (FSI Genetics 2020)

2 participants