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Update variant IDs#46

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standage merged 6 commits intomasterfrom
rsids
Dec 10, 2019
Merged

Update variant IDs#46
standage merged 6 commits intomasterfrom
rsids

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@standage standage commented Dec 10, 2019

This update addresses three issues with variant definitions.

  • First, rsIDs were assigned to the var der Gaag 2018 using an unsophisticated procedure previously, a procedure that introduced a few errors at positions with multiple variants defined. This update assigns correct rsIDs to variants (when possible), as verified by independent manual inspection by two experts.
  • Second, all references to the marker name mh05KK-058 were corrected to mh15KK-058 since this marker does in fact reside on chr15. The name previously assigned by its author violates the rules of nomenclature proposed by that same author.
  • Third, a duplicate marker definition for mh11CP-004 was eliminated.

Closes #43.

@standage standage added bug Something isn't working datasources References to existing data sources or proposals for new sources labels Dec 10, 2019
@standage standage merged commit ca07dda into master Dec 10, 2019
@standage standage deleted the rsids branch December 10, 2019 02:16
standage added a commit that referenced this pull request Sep 11, 2024
Oops. These changes were supposed to be part of #45.
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Check and fix rsIDs

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