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Add SetFixedPoints and SetMovingPoints to ElastixRegistrationMethod, for point-to-point EuclideanDistanceMetric #1239

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N-Dekker merged 2 commits intomainfrom
Add-landmark-support-to-library
Nov 15, 2024
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Add SetFixedPoints and SetMovingPoints to ElastixRegistrationMethod, for point-to-point EuclideanDistanceMetric #1239
N-Dekker merged 2 commits intomainfrom
Add-landmark-support-to-library

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@N-Dekker N-Dekker commented Sep 13, 2024 •
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Currently trying it out in Python:

Dimension = 2
ImageType = itk.Image[itk.UC, Dimension]
PointType = itk.Point[itk.D, Dimension]
PointContainerType = itk.VectorContainer[itk.ULL, PointType]

fixed_image = ImageType.New()
fixed_image.SetRegions(itk.Size[Dimension].Filled(8))
fixed_image.AllocateInitialized()

moving_image = ImageType.New()
moving_image.SetRegions(itk.Size[Dimension].Filled(8))
moving_image.AllocateInitialized()

fixed_point = PointType([0.0, 0.0])
fixed_points = PointContainerType.New()
fixed_points.InsertElement(0, fixed_point)

moving_point = PointType([1.0, -2.0])
moving_points = PointContainerType.New()
moving_points.InsertElement(0, moving_point)

parameter_object = itk.ParameterObject.New()
parameter_object.AddParameterMap(
    {"ImageSampler": ("Full",),
    "MaximumNumberOfIterations": ("2",),
    "Metric": ("AdvancedNormalizedCorrelation", "CorrespondingPointsEuclideanDistanceMetric"),
    "Optimizer": ("AdaptiveStochasticGradientDescent",),
    "Registration": ( "MultiMetricMultiResolutionRegistration",),
    "Transform": ("TranslationTransform",)})

result_image, result_transform_parameters = itk.elastix_registration_method(
    fixed_image, moving_image, fixed_points=fixed_points, moving_points=moving_points,
    parameter_object=parameter_object)

print(result_transform_parameters)

Output:


ParameterObject (000001D212B702D0)
  RTTI typeinfo:   class elastix::ParameterObject
  Reference Count: 1
  Modified Time: 10574
  Debug: Off
  Object Name: 
  Observers: 
    none
ParameterMap 0: 
  (CompressResultImage "false")
  (DefaultPixelValue)
  (Direction 1 0 0 1)
  (FinalBSplineInterpolationOrder 3)
  (FixedImageDimension 2)
  (FixedInternalImagePixelType "float")
  (HowToCombineTransforms "Compose")
  (Index 0 0)
  (InitialTransformParameterFileName "NoInitialTransform")
  (MovingImageDimension 2)
  (MovingInternalImagePixelType "float")
  (NumberOfParameters 2)
  (Origin 0 0)
  (ResampleInterpolator "FinalBSplineInterpolator")
  (Resampler "DefaultResampler")
  (ResultImageFormat "mhd")
  (ResultImagePixelType "unsigned char")
  (Size 8 8)
  (Spacing 1 1)
  (Transform "TranslationTransform")
  (TransformParameters 0.983615 -1.96723)
  (UseDirectionCosines "true")

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N-Dekker commented Sep 16, 2024

TODO: each metric should have its own point set pair, when having multi metric registration.

@N-Dekker N-Dekker force-pushed the Add-landmark-support-to-library branch 2 times, most recently from 48096f5 to 8d389de Compare September 24, 2024 11:55
@N-Dekker
ENH: Add SetFixedPoints and SetMovingPoints to ElastixRegistrationMethod
0c4b5c5 
Supported specifying the input points for CorrespondingPointsEuclideanDistanceMetric.
@N-Dekker N-Dekker force-pushed the Add-landmark-support-to-library branch from 8d389de to 0c4b5c5 Compare November 10, 2024 14:57
@N-Dekker
ENH: Add support 32-bit float coordinates of fixed and moving points
060194f 
Overloaded SetFixedPoints and SetMovingPoints for 32-bit float coordinates.
@N-Dekker N-Dekker marked this pull request as ready for review November 15, 2024 16:16
@N-Dekker N-Dekker merged commit 2261c7d into main Nov 15, 2024
@N-Dekker N-Dekker deleted the Add-landmark-support-to-library branch November 15, 2024 16:16
N-Dekker added a commit to N-Dekker/ITKElastix that referenced this pull request Nov 15, 2024
@N-Dekker
ENH: Upgrade elastix to 2024-11-15, inc. SetFixedPoints, SetMovingPoints
4efcdd2 
Including elastix pull request SuperElastix/elastix#1239
"Add SetFixedPoints and SetMovingPoints to ElastixRegistrationMethod, for
point-to-point EuclideanDistanceMetric"
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