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Updates DockerfileFoundation For Python Packages #4465

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Updates DockerfileFoundation For Python Packages #4465

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@AlexCatarino AlexCatarino commented May 27, 2020 •
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Description

Adds new and updates Python Packages.

Related Issue

Closes #4432 (FastAi2)
Closes #4430 (scikit.tda)
Closes #4408 (sklearn-json)
Closes #4395 (ppscore)
Closes #4388 (PyPortfolioOpt)
Closes #4374 (mpi4py)
Closes #4440 (catboost)
Closes #4468 (TA)

Motivation and Context

Upgrades and add python packages for algorithm development.

Requires Documentation Change

Yes. Update the supported libraries with

# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
absl-py                   0.9.0                    py36_0  
appdirs                   1.4.4                    pypi_0    pypi
arch                      4.14                     pypi_0    pypi
arviz                     0.8.3                      py_0    conda-forge
asn1crypto                1.3.0                    py36_0  
astor                     0.8.0                    py36_0  
astropy                   4.0.1.post1      py36h7b6447c_1  
atari-py                  0.2.6                    pypi_0    pypi
attrs                     19.3.0                     py_0  
auto-ks                   0.1                      pypi_0    pypi
autograd                  1.3                      pypi_0    pypi
backcall                  0.1.0                      py_0    conda-forge
beautifulsoup4            4.9.0                    py36_0  
binutils_impl_linux-64    2.33.1               he1b5a44_7    conda-forge
binutils_linux-64         2.33.1              h9595d00_17    conda-forge
blas                      1.0                         mkl  
blaze                     0.11.3                   py36_0  
bleach                    3.1.5              pyh9f0ad1d_0    conda-forge
blinker                   1.4                        py_1    conda-forge
blosc                     1.16.3               hd408876_0  
bokeh                     2.0.2                    py36_0  
boto                      2.49.0                   py36_0  
boto3                     1.9.253                  pypi_0    pypi
botocore                  1.12.253                 pypi_0    pypi
bottleneck                1.3.2            py36heb32a55_0  
bzip2                     1.0.8                h7b6447c_0  
c-ares                    1.15.0            h7b6447c_1001  
ca-certificates           2020.4.5.1           hecc5488_0    conda-forge
cachetools                3.1.1                      py_0  
cairo                     1.14.12              h8948797_3  
catboost                  0.23.2                   pypi_0    pypi
certifi                   2020.4.5.1               py36_0  
cffi                      1.14.0           py36h2e261b9_0  
cftime                    1.1.3            py36h785e9b2_0    conda-forge
chardet                   3.0.4                 py36_1003  
click                     7.1.2                      py_0  
cloudpickle               1.3.0                    pypi_0    pypi
cmdstanpy                 0.4.0                    pypi_0    pypi
cntk                      2.7                      pypi_0    pypi
colorama                  0.4.3                    pypi_0    pypi
colorlover                0.3.0                    pypi_0    pypi
conda                     4.8.3            py36h9f0ad1d_1    conda-forge
conda-env                 2.6.0                         1  
conda-package-handling    1.6.1            py36h7b6447c_0  
contextvars               2.4                        py_0  
convertdate               2.2.1              pyh9f0ad1d_0    conda-forge
copulae                   0.3.1                      py_0    conda-forge
copulalib                 1.1.0                    pypi_0    pypi
copulas                   0.3.0                    pypi_0    pypi
creme                     0.5.1                    pypi_0    pypi
cryptography              2.9.2            py36h1ba5d50_0  
cudatoolkit               10.2.89              hfd86e86_1  
cufflinks                 0.17.3                   pypi_0    pypi
curl                      7.69.1               h33f0ec9_0    conda-forge
cvxopt                    1.2.0            py36hfa32c7d_0  
cvxpy                     1.0.31                   pypi_0    pypi
cycler                    0.10.0                     py_2    conda-forge
cymem                     2.0.2            py36he1b5a44_0    fastai
cython                    0.29.17          py36he6710b0_0  
cython-blis               0.2.4            py36h516909a_1    fastai
cytoolz                   0.10.1           py36h7b6447c_0  
dask                      2.17.2                     py_0  
dask-core                 2.17.2                     py_0  
dataclasses               0.6                      py36_0    fastai
datashape                 0.5.4                    py36_1  
dbus                      1.13.14              hb2f20db_0  
deap                      1.3.1                    pypi_0    pypi
decorator                 4.4.2                      py_0  
defusedxml                0.6.0                      py_0    conda-forge
dill                      0.3.1.1                  py36_0  
distributed               2.17.0                   py36_0  
docutils                  0.14                     py36_0  
dtw-python                1.0.5                    pypi_0    pypi
dx                        0.1.2                    pypi_0    pypi
ecos                      2.0.7.post1              pypi_0    pypi
entrypoints               0.3             py36h9f0ad1d_1001    conda-forge
ephem                     3.7.7.1          py36h516909a_0    conda-forge
expat                     2.2.6                he6710b0_0  
exrex                     0.10.5                   pypi_0    pypi
fastai                    1.0.61                        1    fastai
fastai2                   0.0.17                   pypi_0    pypi
fastcore                  0.1.17                   pypi_0    pypi
fastprogress              0.2.2                      py_0    fastai
fasttext                  0.9.2                    pypi_0    pypi
fbprophet                 0.6              py36he1b5a44_0    conda-forge
featuretools              0.14.0                     py_0    conda-forge
flask                     1.1.2                      py_0  
flask-cors                3.0.8                      py_0  
fontconfig                2.13.0               h9420a91_0  
freetype                  2.9.1                h8a8886c_1  
fribidi                   1.0.5                h7b6447c_0  
frozendict                1.2                      pypi_0    pypi
fsspec                    0.7.4                      py_0  
future                    0.18.2                   pypi_0    pypi
gast                      0.2.2                    py36_0  
gcc_impl_linux-64         7.3.0                habb00fd_1  
gcc_linux-64              7.3.0               h553295d_17    conda-forge
gensim                    3.8.0            py36h962f231_0  
glib                      2.63.1               h5a9c865_0  
glpk                      4.65                 h3ceedfd_2  
gluonts                   0.4.3                    pypi_0    pypi
gmp                       6.1.2                h6c8ec71_1  
google-api-core           1.17.0                   py36_0  
google-auth               1.14.1                     py_0  
google-cloud-core         1.3.0                      py_0  
google-cloud-storage      1.28.0                     py_0  
google-pasta              0.2.0                      py_0  
google-resumable-media    0.5.0                      py_1  
googleapis-common-protos  1.51.0                   py36_2  
gplearn                   0.4.1                    pypi_0    pypi
graphite2                 1.3.13               h23475e2_0  
graphviz                  2.40.1               h21bd128_2  
grpcio                    1.27.2           py36hf8bcb03_0  
gsl                       2.4                  h14c3975_4  
gst-plugins-base          1.14.0               hbbd80ab_1  
gstreamer                 1.14.0               hb453b48_1  
gxx_impl_linux-64         7.3.0                hdf63c60_1  
gxx_linux-64              7.3.0               h553295d_17    conda-forge
gym                       0.17.2                   pypi_0    pypi
h2o                       3.30.0.3                 pypi_0    pypi
h5py                      2.10.0           py36h7918eee_0  
harfbuzz                  1.8.8                hffaf4a1_0  
hdf4                      4.2.13                        0    conda-forge
hdf5                      1.10.4               hb1b8bf9_0  
heapdict                  1.0.1                      py_0  
hmmlearn                  0.2.3                    pypi_0    pypi
holidays                  0.9.12                   pypi_0    pypi
hopcroftkarp              1.2.5                    pypi_0    pypi
icu                       58.2                 he6710b0_3  
idna                      2.9                        py_1  
immutables                0.11             py36h7b6447c_0  
importlib-metadata        1.6.0                    py36_0  
importlib_metadata        1.6.0                         0  
intel-openmp              2020.1                      217  
intelpython               2020.1                        0    intel
ipykernel                 5.3.0            py36h95af2a2_0    conda-forge
ipython                   7.15.0           py36h9f0ad1d_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.5.1                    pypi_0    pypi
itsdangerous              1.1.0                    py36_0  
jax                       0.1.68                   pypi_0    pypi
jaxlib                    0.1.47                   pypi_0    pypi
jedi                      0.17.0           py36h9f0ad1d_0    conda-forge
jinja2                    2.11.2                     py_0  
jmespath                  0.9.4                      py_0  
joblib                    0.15.1                     py_0  
jpeg                      9b                   h024ee3a_2  
json5                     0.9.0                      py_0    conda-forge
jsonschema                3.2.0                    py36_0  
jupyter_client            6.1.3                      py_0    conda-forge
jupyter_core              4.6.3            py36h9f0ad1d_1    conda-forge
jupyterlab                2.1.2                      py_0    conda-forge
jupyterlab_server         1.1.5                      py_0    conda-forge
keras                     2.3.1                         0  
keras-applications        1.0.8                      py_0  
keras-base                2.3.1                    py36_0  
keras-preprocessing       1.1.0                      py_1  
keras-rl                  0.4.2                    pypi_0    pypi
kiwisolver                1.2.0            py36hdb11119_0    conda-forge
kmapper                   1.2.0                    pypi_0    pypi
korean_lunar_calendar     0.2.1              pyh9f0ad1d_0    conda-forge
krb5                      1.17.1               h173b8e3_0  
ld_impl_linux-64          2.33.1               h53a641e_7  
libblas                   3.8.0                    15_mkl    conda-forge
libcblas                  3.8.0                    15_mkl    conda-forge
libcurl                   7.69.1               hf7181ac_0    conda-forge
libedit                   3.1.20181209         hc058e9b_0  
libffi                    3.2.1                hd88cf55_4  
libgcc-ng                 9.1.0                hdf63c60_0  
libgfortran-ng            7.3.0                hdf63c60_0  
libgpuarray               0.7.6             h14c3975_1003    conda-forge
libnetcdf                 4.7.3                hb80b6cc_0  
libpng                    1.6.37               hbc83047_0  
libprotobuf               3.11.4               hd408876_0  
libsodium                 1.0.17               h516909a_0    conda-forge
libssh2                   1.9.0                hab1572f_2    conda-forge
libstdcxx-ng              8.2.0                hdf63c60_1  
libtiff                   4.1.0                h2733197_0  
libuuid                   1.0.3                h1bed415_2  
libxcb                    1.13                 h1bed415_1  
libxml2                   2.9.9                hea5a465_1  
libxslt                   1.1.33               h7d1a2b0_0  
lightgbm                  2.3.0            py36he6710b0_0  
llvmlite                  0.30.0           py36hd408876_0  
locket                    0.2.0                    py36_1  
lunarcalendar             0.0.9                      py_0    conda-forge
lxml                      4.5.0            py36hefd8a0e_0  
lz4-c                     1.8.1.2              h14c3975_0  
lzo                       2.10                 h7b6447c_2  
mako                      1.1.0                      py_0    conda-forge
markdown                  3.1.1                    py36_0  
markupsafe                1.1.1            py36h7b6447c_0  
matplotlib                3.1.1                    pypi_0    pypi
metis                     5.1.0                hf484d3e_4  
mistune                   0.8.4           py36h8c4c3a4_1001    conda-forge
mkl                       2020.1                      217  
mkl-service               2.3.0            py36he904b0f_0  
mkl_fft                   1.0.15           py36ha843d7b_0  
mkl_random                1.1.1            py36h0573a6f_0  
mlfinlab                  0.10.0                   pypi_0    pypi
mmh3                      2.5.1                    pypi_0    pypi
mock                      4.0.2                      py_0  
more-itertools            8.3.0                    pypi_0    pypi
mpi                       1.0                     openmpi    conda-forge
mpi4py                    3.0.3            py36h18711f9_1    conda-forge
mplfinance                0.12.4a0                 pypi_0    pypi
msgpack-numpy             0.4.6.post0              pypi_0    pypi
msgpack-python            1.0.0            py36hfd86e86_1  
multipledispatch          0.6.0                    py36_0  
multiprocess              0.70.9                   pypi_0    pypi
murmurhash                1.0.2            py36he6710b0_0  
mxnet                     1.6.0                    pypi_0    pypi
nbconvert                 5.6.1            py36h9f0ad1d_1    conda-forge
nbformat                  5.0.6                      py_0    conda-forge
ncurses                   6.2                  he6710b0_1  
netcdf4                   1.5.3            py36hbf33ddf_0  
networkx                  2.4                        py_0  
neural-tangents           0.2.1                    pypi_0    pypi
ninja                     1.9.0            py36hfd86e86_0  
nltk                      3.4.5                    py36_0  
notebook                  6.0.3            py36h9f0ad1d_0    conda-forge
numba                     0.46.0           py36h962f231_0  
numexpr                   2.7.1            py36h423224d_0  
numpy                     1.18.1           py36h4f9e942_0  
numpy-base                1.18.1           py36hde5b4d6_1  
nvidia-ml-py3             7.352.0                    py_0    fastai
oauthlib                  3.0.1                      py_0    conda-forge
odo                       0.5.1+64.g9fce669          pypi_0    pypi
olefile                   0.46                     py36_0  
opencv-python             4.2.0.34                 pypi_0    pypi
openmpi                   4.0.3                hdf1f1ad_1    conda-forge
openssl                   1.1.1g               h516909a_0    conda-forge
opt_einsum                3.1.0                      py_0  
osqp                      0.6.1                    pypi_0    pypi
packaging                 20.3                       py_0  
pandas                    0.25.3           py36he6710b0_0  
pandoc                    2.9.2.1                       0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
pango                     1.42.4               h049681c_0  
parso                     0.7.0              pyh9f0ad1d_0    conda-forge
partd                     1.1.0                      py_0  
patsy                     0.5.1                      py_0    conda-forge
pcre                      8.43                 he6710b0_0  
pennylane                 0.9.0                    pypi_0    pypi
persim                    0.1.2                    pypi_0    pypi
pexpect                   4.8.0            py36h9f0ad1d_1    conda-forge
pickleshare               0.7.5           py36h9f0ad1d_1001    conda-forge
pillow                    7.1.2            py36hb39fc2d_0  
pip                       20.0.2                   py36_3  
pixman                    0.38.0               h7b6447c_0  
plac                      0.9.6                    py36_0  
plotly                    4.7.1                      py_0    plotly
pluggy                    0.13.1                   pypi_0    pypi
pomegranate               0.11.1           py36ha516724_0  
ppscore                   0.0.2                    pypi_0    pypi
preshed                   2.0.1            py36he6710b0_0  
prometheus_client         0.8.0              pyh9f0ad1d_0    conda-forge
prompt-toolkit            3.0.5                      py_0    conda-forge
property-cached           1.6.4                    pypi_0    pypi
protobuf                  3.11.4           py36he6710b0_0  
psutil                    5.7.0            py36h7b6447c_0  
ptyprocess                0.6.0                   py_1001    conda-forge
pulp                      1.6.8                 py36_1000    conda-forge
py                        1.8.1                    pypi_0    pypi
pyaml                     19.4.1                     py_0    conda-forge
pyasn1                    0.4.8                      py_0  
pyasn1-modules            0.2.7                      py_0  
pybind11                  2.5.0                    pypi_0    pypi
pycosat                   0.6.3            py36h7b6447c_0  
pycparser                 2.20                       py_0  
pydantic                  1.5.1                    pypi_0    pypi
pyglet                    1.5.0                    pypi_0    pypi
pygments                  2.6.1                      py_0    conda-forge
pygpu                     0.7.6           py36hc1659b7_1000    conda-forge
pyjwt                     1.7.1                      py_0    conda-forge
pykalman                  0.9.5                    pypi_0    pypi
pymc3                     3.8                        py_0    conda-forge
pymeeus                   0.3.7              pyh9f0ad1d_0    conda-forge
pyopenssl                 19.1.0                   py36_0  
pyparsing                 2.4.7                      py_0  
pyportfolioopt            1.2.2                    pypi_0    pypi
pyqt                      5.9.2            py36h05f1152_2  
pyramid-arima             0.9.0                    pypi_0    pypi
pyrb                      1.0.1                    pypi_0    pypi
pyro-api                  0.1.2                    pypi_0    pypi
pyro-ppl                  1.3.1                    pypi_0    pypi
pyrsistent                0.16.0           py36h7b6447c_0  
pysocks                   1.7.1                    py36_0  
pystan                    2.19.1.1         py36hb3f55d8_1    conda-forge
pytables                  3.6.1            py36h71ec239_0  
pytest                    5.4.3                    pypi_0    pypi
python                    3.6.8                h0371630_0  
python-dateutil           2.8.0                    pypi_0    pypi
python-graphviz           0.8.4                    py36_1  
python_abi                3.6                     1_cp36m    conda-forge
pytorch                   1.5.0           py3.6_cuda10.2.89_cudnn7.6.5_0    pytorch
pytz                      2020.1                     py_0  
pywavelets                1.1.1            py36h785e9b2_1    conda-forge
pyyaml                    5.3.1            py36h7b6447c_0  
pyzmq                     19.0.1           py36h9947dbf_0    conda-forge
qt                        5.9.7                h5867ecd_1  
quadprog                  0.1.7                    pypi_0    pypi
quantlib                  1.18                     pypi_0    pypi
quantlib-python           1.18                     pypi_0    pypi
rauth                     0.7.3                      py_0    conda-forge
readline                  7.0                  h7b6447c_5  
requests                  2.23.0                   py36_0  
requests-oauthlib         1.2.0                      py_0    conda-forge
retrying                  1.3.3                    py36_2  
ripser                    0.4.1                    pypi_0    pypi
riskparityportfolio       0.2                      pypi_0    pypi
rsa                       4.0                        py_0  
ruamel_yaml               0.15.87          py36h7b6447c_0  
scikit-learn              0.21.3           py36hcdab131_0    conda-forge
scikit-multiflow          0.4.1            py36h9de70de_1    conda-forge
scikit-optimize           0.7.4                      py_0    conda-forge
scikit-tda                0.0.3                    pypi_0    pypi
scipy                     1.4.1            py36h0b6359f_0  
scs                       2.1.2                    pypi_0    pypi
seaborn                   0.10.1                   pypi_0    pypi
semantic-version          2.6.0                    pypi_0    pypi
send2trash                1.5.0                      py_0    conda-forge
setuptools                47.1.1                   py36_0  
setuptools-git            1.2              py36h28b3542_1  
sip                       4.19.8           py36hf484d3e_0  
six                       1.14.0                   py36_0  
sklearn                   0.0                      pypi_0    pypi
sklearn-contrib-py-earth  0.1.0                    pypi_0    pypi
sklearn-json              0.1.0                    pypi_0    pypi
smart_open                2.0.0                      py_0  
snappy                    1.1.7                hbae5bb6_3  
sortedcontainers          2.1.0                    py36_0  
soupsieve                 2.0.1                      py_0  
spacy                     2.1.8            py36hc9558a2_0    fastai
sqlalchemy                1.3.17           py36h7b6447c_0  
sqlite                    3.31.1               h62c20be_1  
srsly                     0.1.0            py36he1b5a44_0    fastai
ssm                       0.0.1                    pypi_0    pypi
stable-baselines          2.10.0                   pypi_0    pypi
statistics                1.0.3.5                  pypi_0    pypi
statsmodels               0.11.1           py36h8c4c3a4_1    conda-forge
suitesparse               5.2.0                h9e4a6bb_0  
ta                        0.5.25                   pypi_0    pypi
ta-lib                    0.4.18                   pypi_0    pypi
tabulate                  0.8.7                    pypi_0    pypi
tadasets                  0.0.4                    pypi_0    pypi
tbb                       2020.0.133               pypi_0    pypi
tblib                     1.6.0                      py_0  
tensorboard               1.15.0             pyhb230dea_0  
tensorflow                1.15.2                   py36_0    intel
tensorflow-base           1.15.0          mkl_py36he1670d9_0  
tensorflow-estimator      1.15.1             pyh2649769_0  
tensorforce               0.5.4                    pypi_0    pypi
termcolor                 1.1.0                    py36_1  
terminado                 0.8.3            py36h9f0ad1d_1    conda-forge
testpath                  0.4.4                      py_0    conda-forge
theano                    1.0.4           py36he1b5a44_1001    conda-forge
thinc                     7.0.8            py36hc9558a2_0    fastai
tigramite                 4.1.0                    pypi_0    pypi
tk                        8.6.8                hbc83047_0  
toml                      0.10.1                   pypi_0    pypi
toolz                     0.10.0                     py_0  
torchvision               0.6.0                py36_cu102    pytorch
tornado                   6.0.4            py36h7b6447c_1  
tqdm                      4.46.0                     py_0  
traitlets                 4.3.3            py36h9f0ad1d_1    conda-forge
tsfresh                   0.15.1                     py_0    conda-forge
tslearn                   0.3.1            py36h785e9b2_0    conda-forge
tweepy                    3.8.0                      py_0    conda-forge
typing_extensions         3.7.4.1                  py36_0  
ujson                     1.35                     pypi_0    pypi
umap-learn                0.4.3            py36h9f0ad1d_0    conda-forge
urllib3                   1.25.8                   py36_0  
wasabi                    0.2.2                      py_0    fastai
wcwidth                   0.2.3              pyh9f0ad1d_0    conda-forge
webencodings              0.5.1                      py_1    conda-forge
werkzeug                  0.16.1                     py_0  
wheel                     0.34.2                   py36_0  
widgetsnbextension        3.5.1                    pypi_0    pypi
wrapt                     1.12.1           py36h7b6447c_1  
xarray                    0.15.1                     py_0  
xgboost                   1.1.0                    pypi_0    pypi
xmlrunner                 1.7.7                    pypi_0    pypi
xz                        5.2.5                h7b6447c_0  
yaml                      0.1.7                had09818_2  
zeromq                    4.3.2                he1b5a44_2    conda-forge
zict                      2.0.0                      py_0  
zipp                      3.1.0                      py_0  
zlib                      1.2.11               h7b6447c_3  
zstd                      1.3.7                h0b5b093_0

How Has This Been Tested?

Packages unit test and regression tests in Linux environment.

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • Refactor (non-breaking change which improves implementation)
  • Performance (non-breaking change which improves performance. Please add associated performance test and results)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)
  • Non-functional change (xml comments/documentation/etc)

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  • My code follows the code style of this project.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.
  • My branch follows the naming convention bug-<issue#>-<description> or feature-<issue#>-<description>

Martin-Molinero
Martin-Molinero approved these changes Jun 2, 2020
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@AlexCatarino AlexCatarino force-pushed the feature-4432-update-dockerfilefoundation branch 3 times, most recently from bb2fbd1 to 834ce3a Compare June 5, 2020 01:40
@AlexCatarino
Updates DockerfileFoundation For Python Packages
182326f 
Adds new and updates Python Packages:
Closes #4432 (FastAi2)
Closes #4430 (scikit.tda)
Closes #4408 (sklearn-json)
Closes #4395 (ppscore)
Closes #4388 (PyPortfolioOpt)
Closes #4374 (mpi4py)
@AlexCatarino
Adds TA
7cd389e 
Reverts gluonts upgrade (it forces pandas 1 upgrade)
@AlexCatarino AlexCatarino force-pushed the feature-4432-update-dockerfilefoundation branch from 834ce3a to 7cd389e Compare November 24, 2020 18:45
@Martin-Molinero Martin-Molinero self-requested a review December 10, 2020 22:33
@gsalaz98 gsalaz98 mentioned this pull request Dec 15, 2020
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Martin-Molinero commented Dec 15, 2020

Replaced by #5036

@AlexCatarino AlexCatarino deleted the feature-4432-update-dockerfilefoundation branch February 1, 2021 09:38
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