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Update dwi2response dhollander#1545

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thijsdhollander merged 50 commits intoscript_changesfrom
update_dwi2response_dhollander
Feb 5, 2019
Merged

Update dwi2response dhollander#1545
thijsdhollander merged 50 commits intoscript_changesfrom
update_dwi2response_dhollander

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@thijsdhollander
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Updates to dwi2response dhollander algorithm and user interface (not the arguments/options, only what information appears on the terminal as feedback for the user).

@Lestropie : I've created this pull request against the script_changes branch for convenience. It's entirely up to date with script_changes and thus uses the new API throughout. I've also manually checked that those API changes don't break my intended behaviour (as I had finished most of these changes before the new API, and later on merged the API in), similar to how I believe you've manually checked outputs for other scripts before/after script_changes's impact.

Don't merge yet; I still have to have a final check, and update some documentation.

…uring development (will eventually again become a single dhollander algo though, if dhollander_new performs to expectations)
…experiments.

Just to record this in the commit history for convenience. Eventually, dhollander_old and dhollander_new will dissappear again; dhollander_new will become dhollander.
@thijsdhollander
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Alright, all checked and done. I'll merge this into script_changes tomorrow morning (Tuesday morning AEDT). Rob indicated to still have the script_changes PR open until next video call as well; just in case.

@thijsdhollander thijsdhollander merged commit 4892e4a into script_changes Feb 5, 2019
@thijsdhollander thijsdhollander self-assigned this Feb 5, 2019
@Lestropie Lestropie deleted the update_dwi2response_dhollander branch July 30, 2019 11:39
Lestropie added a commit that referenced this pull request Jan 8, 2020
Revert FOD amplitude & fixel size default cutoffs from 0.05 back to 0.1 (partial reversion of #1228) based on combination of #1715 and #1545.
In addition, halve the default cutoff for all algorithms when utilising ACT as investigated in #1833.
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