Rewrite DOI parsing#99
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I would recommend to make it final.
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would it make sense to use an instance of the DOI class for this method?
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I did a quick test with clean up entries and all things work (DOI in note field, DOI and some text in note field, DOI in URL field, existing DOI). |
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* Fix the code from code review * Fix from code review and create new AiChatTabWorking * Improve chat history storage code * More fix from code review * Remove obsolete parameter * Add JavaDoc comment * Fix checkstyle * Fix JavaDoc * Fix more checkstyle * More checkstyle fixes * Fix code changes * Improve the PR * Rework ADR-0031 to enable to use another option * Add many LOGGEr.trace statements * Change "message window" to "context window" * Fix compiler errors * Fix issue list index issue of langchain4j * Fix lint issue * Update 0031-store-chats-alongside-database.md * More tracing * Refine logging * Remove closing of AiChatLanguageModel (because it's not closable) * Use external package for OpenAI API connection * Provide a custom executor for RetrievalAugmentor * Fix shutdown issue (I hope) * Refactor classes * Change BibDatabaseChatHistoryFile * Revert BibDatabaseChatHistoryFile to old version because of langchain4j * Make round corners for chat messages * Refactor embeddings generation * Refactor embeddings generation * Refactor embeddings generation * Fix CHANGELOG.md * Remove jpro-mdfx * Add comment * Fix localizations * Fix checkstyle and remove OpenAI from PRIVACY.md * Remove unnecessary comments * Fix privacy notice UI * Introduce new ApiKeyMissingComponent * Thanks Tobiaz Diez for writing such a good EntryEditorTab class * Fix InAnYan/jabref issues * Merge `build.gradle` and `settings.gradle` from main branch * Update ADRs * Implement rethought ADR for chat history * Use OpenAI embedding model * Use Deep Java embedding model * Remove old langchain4j embedding models * Fix checkstyle errors * Fix checkstyle and remove old dependencies * Fixes from code review * Restructure * Fix checkstyle errors * Add API base URL parameter * Fix localization * Fix from code review + ADR * Something broken * Now MistralAI and Hugging Face work * Fix base URL for other LLM providers * Fix base URL for other LLM providers * Refactor MVStore usage * Load embedding model in background * Bump langchain4j version * Fix bug * Fix checkstyle and localization * Implement summarization * Fix checkstyle and localization * Improve PrivacyNoticeComponent * Fix from code review * Update localization * Wrap text * Add padding * Fix markdown * Use stuff algorithm * Add GPT-4o-mini * Make chat model editable * Update context window size and summarization * Fix checkstyle * Update PrivacyNoticeComponent.fxml * Update AI summary tab * Fix localization * Change order so that there is no diff * Reorrder dependencies * Add missing CHANGELOG.md entry * Refine ADR-0033 * Refine ADR0034 * Fix typos * Refine ADR-0036 * Fix ADR-0037 * Fix title case * Fix changes in module-info.java * Readd removed requires org.apache.httpcomponents.core5.httpcore5 * Revert change in JabRefGUI to avoid conflicts * Remove empty lines * Reorder entries in JabRef_en.properties * Simplify SummariesStorage (and add test) * Use region/endregion * Fix position of comment * Add comment why the event bus is needed * Do not show exception to the user - just that an error is occurred (saves %0 in localization) * Use "URL %0" without colon (consistency) * Fix typos * History has to be kept * Remove empty lines * Fix language (hopefully) * Compilefix * Simplify BibDatabaseChatHistoryManager * Fix from code review * Fix issue #103 * Rework embeddings cache clearing * Fix #99 and partially #101 * Partially fixing shutdown issues and UI progress monitor issue * Add "requires scala.library" and add "region:" / "endregion" * More grouping (move de.saxsys.mvvmfx.validation up) * Add alphabetical hint * Fix InAnYan#101 and InAnYan#106 * Discard changes to settings.gradle * Fix InAnYan#105 * Follow-up fix for InAnYan#103 * Follow-up fix for InAnYan#103 * Remove obsolete class * Partially fix InAnYan#98 * We do need dependencies to the AI providers, don't we? * Fix InAnYan#93 * Simplify code * Partially fix InAnYan#92 * Fix checkstyle and localization * Fix hyperlinks and text in ApiKeyMissingComponent * Fixes from code review * Fix InAnYan#120 * Remove "X% work done" messages * Fix InAnYan#114 * Partially fix InAnYan#113 * Partially fix InAnYan#110 * Fix InAnYan#110 * Fix InAnYan#111 * Improve embedding model downloading notifications * Fix InAnYan#124 * Fix InAnYan#122 * Fix wrong context window size when expert settings customization is turned off * Attempt to fix InAnYan#95 * Finally fix InAnYan#105 * Fix InAnYan#108 * Attempt to fix InAnYan#98 * Fix for InAnYan#104 * Fix for InAnYan#98 * Fix for InAnYan#95 (comment) * Fix for InAnYan#98 (comment) * Fix for InAnYan#126 * Fix for InAnYan#115 * Fix for InAnYan#113 * Fix for InAnYan#91 * Fix for InAnYan#121 * Fix for InAnYan#112 and InAnYan#116 * Fix for InAnYan#125 * Fixes from commit comments * Fix for InAnYan#115 * Fix for InAnYan#120 * Fix for InAnYan#132 * Fix for InAnYan#132 * Fix for InAnYan#104 * Fix for InAnYan#118 * Fix for InAnYan#114 * Fix for InAnYan#104 * Store error messages in chat history * Make error be a ChatMessageComponent * Implement delete messages InAnYan#136 * Fix for InAnYan#118 * Fix for InAnYan#92 * Fix checkstyle and localization. And refactoring * Fix for InAnYan#92 * Fix for InAnYan#139 * Show "Delete message" button only when necessary * Fix for InAnYan#83 * Update src/main/java/org/jabref/logic/ai/AiService.java Co-authored-by: Oliver Kopp <kopp.dev@gmail.com> * Update src/main/java/org/jabref/logic/ai/chathistory/BibDatabaseChatHistoryManager.java Co-authored-by: Oliver Kopp <kopp.dev@gmail.com> * Update src/main/java/org/jabref/logic/ai/AiService.java Co-authored-by: Oliver Kopp <kopp.dev@gmail.com> * Update src/main/java/org/jabref/gui/Base.css Co-authored-by: Oliver Kopp <kopp.dev@gmail.com> * Update src/main/java/org/jabref/gui/Base.css Co-authored-by: Oliver Kopp <kopp.dev@gmail.com> * Fix from code review * Partial fix for InAnYan#125 * Update colors for error message * Fix for InAnYan#145 and InAnYan#142 * Make progress for embedding model download * Fix checkstyle and localization * Add workaround to get FileHistoryMenuTest running again * Small fixes * Revert "Small fixes" This reverts commit 85382a1. * Introduce AiApiKeyProvider * Fix IDE setup instructions * Do not load API keys on startup * Rely on keystore encryption * Prevent mulitple rebuilds when muliple preferences are updated * Fix localization to be more provider independent * Fix method names * Add poor man's solution to notify of API key changes * Reduce calls to key store (and fix key saving) * Fix for InAnYan#148 and partially InAnYan#146 * Revert "Fix for InAnYan#148 and partially InAnYan#146" This reverts commit 5fa3bb5. * Fix for scrolling down when deleting a message * Sort EmbeddingModel enum variants * Fix GenerateSummaryTask progress indication * Fix dark mode * Add notice for embedding models size --------- Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
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I rewrote the DOI parser as it was hard to understand and missing quite a few valid DOIs.
It's not 100% but should be a lot better than before.
Any comments before merging this into master are appreciated.