Module org.jabref.merged.module does not read module org.apache.commons.logging

### JabRef version

Latest development branch build (please note build date below)

### Operating system

GNU / Linux

### Details on version and operating system

openSUSE Tumbleweed with KDE Plasma 6.0.5

### Checked with the latest development build (copy version output from About dialog)

- [X] I made a backup of my libraries before testing the latest development version.
- [X] I have tested the latest development version and the problem persists

### Steps to reproduce the behaviour

1. Create new library
2. File > Import > Import to current library
3. Pick a file (PubMed text format)
4. Wait for references to populate importer window.
5. Click a button -- "Import all", I think -- before any references have appeared
6. Exception.

After this exception, I tried again to retrace my steps, but this time there was a different error without any action on my part past step 4. I submitted that as issue https://github.com/JabRef/jabref/issues/11397


### Appendix

...
<details>

<summary>Log File</summary>

```
java.lang.Exception: java.lang.IllegalAccessError: class org.apache.pdfbox.io.IOUtils (in module org.jabref.merged.module) cannot access class org.apache.commons.logging.LogFactory (in module org.apache.commons.logging) because module org.jabref.merged.module does not read module org.apache.commons.logging
	at org.jabref@5.14.190/org.jabref.gui.util.UiTaskExecutor.convertToException(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.util.UiTaskExecutor.lambda$getJavaFXTask$5(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
	at javafx.base@22.0.1/javafx.event.Event.fireEvent(Unknown Source)
	at javafx.graphics@22.0.1/javafx.concurrent.EventHelper.fireEvent(Unknown Source)
	at javafx.graphics@22.0.1/javafx.concurrent.Task.fireEvent(Unknown Source)
	at javafx.graphics@22.0.1/javafx.concurrent.Task.setState(Unknown Source)
	at javafx.graphics@22.0.1/javafx.concurrent.Task$TaskCallable.lambda$call$2(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.application.PlatformImpl.lambda$runLater$10(Unknown Source)
	at java.base/java.security.AccessController.doPrivileged(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.application.PlatformImpl.lambda$runLater$11(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.InvokeLaterDispatcher$Future.run(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.gtk.GtkApplication.enterNestedEventLoopImpl(Native Method)
	at javafx.graphics@22.0.1/com.sun.glass.ui.gtk.GtkApplication._enterNestedEventLoop(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.Application.enterNestedEventLoop(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.EventLoop.enter(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.tk.quantum.QuantumToolkit.enterNestedEventLoop(Unknown Source)
	at javafx.graphics@22.0.1/javafx.stage.Stage.showAndWait(Unknown Source)
	at javafx.controls@22.0.1/javafx.scene.control.HeavyweightDialog.showAndWait(Unknown Source)
	at javafx.controls@22.0.1/javafx.scene.control.Dialog.showAndWait(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.JabRefDialogService.showCustomDialogAndWait(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.importer.ImportCommand.importSingleFile(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.importer.ImportCommand.lambda$execute$0(Unknown Source)
	at java.base/java.util.Optional.ifPresent(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.importer.ImportCommand.execute(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.actions.JabRefAction.lambda$new$1(Unknown Source)
	at org.jabref.merged.module@5.14.190/org.controlsfx.control.action.Action.handle(Unknown Source)
	at org.jabref.merged.module@5.14.190/org.controlsfx.control.action.Action.handle(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
	at javafx.base@22.0.1/javafx.event.Event.fireEvent(Unknown Source)
	at javafx.controls@22.0.1/javafx.scene.control.MenuItem.fire(Unknown Source)
	at javafx.controls@22.0.1/com.sun.javafx.scene.control.ContextMenuContent$MenuItemContainer.doSelect(Unknown Source)
	at javafx.controls@22.0.1/com.sun.javafx.scene.control.ContextMenuContent$MenuItemContainer.lambda$createChildren$12(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
	at javafx.base@22.0.1/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
	at javafx.base@22.0.1/javafx.event.Event.fireEvent(Unknown Source)
	at javafx.graphics@22.0.1/javafx.scene.Scene$MouseHandler.process(Unknown Source)
	at javafx.graphics@22.0.1/javafx.scene.Scene.processMouseEvent(Unknown Source)
	at javafx.graphics@22.0.1/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
	at java.base/java.security.AccessController.doPrivileged(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.View.handleMouseEvent(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.View.notifyMouse(Unknown Source)
	at javafx.graphics@22.0.1/com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
	at javafx.graphics@22.0.1/com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$10(Unknown Source)
	at java.base/java.lang.Thread.run(Unknown Source)
Caused by: java.lang.IllegalAccessError: class org.apache.pdfbox.io.IOUtils (in module org.jabref.merged.module) cannot access class org.apache.commons.logging.LogFactory (in module org.apache.commons.logging) because module org.jabref.merged.module does not read module org.apache.commons.logging
	at org.jabref.merged.module@5.14.190/org.apache.pdfbox.io.IOUtils.<clinit>(Unknown Source)
	at org.jabref.merged.module@5.14.190/org.apache.pdfbox.Loader.loadPDF(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.xmp.XmpUtilReader.loadWithAutomaticDecryption(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.xmp.XmpUtilReader.readXmp(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.xmp.XmpUtilShared.hasMetadata(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.importer.fileformat.PdfXmpImporter.isRecognizedFormat(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.importer.ImportFormatReader.lambda$importUnknownFormat$1(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.importer.ImportFormatReader.importUnknownFormat(Unknown Source)
	at org.jabref@5.14.190/org.jabref.logic.importer.ImportFormatReader.importUnknownFormat(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.importer.ImportCommand.doImport(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.importer.ImportCommand.lambda$importSingleFile$1(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.util.BackgroundTask$1.call(Unknown Source)
	at org.jabref@5.14.190/org.jabref.gui.util.UiTaskExecutor$1.call(Unknown Source)
	at javafx.graphics@22.0.1/javafx.concurrent.Task$TaskCallable.call(Unknown Source)
	at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	... 1 more

```

</details>


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Uh oh!

Module org.jabref.merged.module does not read module org.apache.commons.logging #11398

JabRef version

Operating system

Details on version and operating system

Checked with the latest development build (copy version output from About dialog)

Steps to reproduce the behaviour

Appendix

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Uh oh!

Module org.jabref.merged.module does not read module org.apache.commons.logging #11398

Description

JabRef version

Operating system

Details on version and operating system

Checked with the latest development build (copy version output from About dialog)

Steps to reproduce the behaviour

Appendix

Metadata

Metadata

Assignees

Labels

Type

Fields

Projects

Milestone

Relationships

Development

Issue actions