Description

When it tries to do the NIFTI2BIDS conversion, it can't find the ASL.jsons. When I open the rawdata folder/perf, the folder is empty, but the rawdata/anat has the T1.nii and T1.json

JAN: The main issue was that it appended "run_01" to the NII name after DCM2NII - this should have never happened.

Tasks

• Stop adding run_xx to names in DCM2NII.
• Add that dataset to Flavors - Siemens_PCASL_3DGRASE_VE11C_HadamardFME_1
• If Sessions are defined in sourceStructureJson, then always add runs to the name, not only when a single session is there.
• Check old code by Bea+Henk
• Delete old backup branch - bug-#1167_HAD4_nii2BIDS_BACKUP
• Detele old rebased branch
• add warnings similar to those done by commits by Henk+Bea

How to test

The error in the log file is this:

The import with HAD4 is working perfectly:

Working on : Projects/ExploreASL/BBB-ASL/Oslo/piloting_multirun_Markus_aug22/Siemens_...HAD8
For the ASL dicoms, I've copied these ones (orange for HAD8 and green for HAD4):

Release notes

Fix multi-run import.