Skip to content
This repository was archived by the owner on Jun 30, 2025. It is now read-only.
Permalink

Comparing changes

Choose two branches to see what’s changed or to start a new pull request. If you need to, you can also or learn more about diff comparisons.

Open a pull request

Create a new pull request by comparing changes across two branches. If you need to, you can also . Learn more about diff comparisons here.
base repository: CogStack/MedCAT2
Failed to load repositories. Confirm that selected base ref is valid, then try again.
Loading
base: 25bb8c3
Choose a base ref
...
head repository: CogStack/MedCAT2
Failed to load repositories. Confirm that selected head ref is valid, then try again.
Loading
compare: 7d4aa88
Choose a head ref
  • 7 commits
  • 42 files changed
  • 1 contributor

Commits on Jun 19, 2025

  1. Configuration menu
    Copy the full SHA
    0fdadbf View commit details
    Browse the repository at this point in the history
  2. CU-8699g3ajp v2 beta compatibility (#91)

    * CU-8699g3ajp: Update backwards compatibility workflow.
    
    Will now fail upon any individual model failing
    
    * CU-8699g3ajp: Add method to remap module packages when loading model with dill
    
    * CU-8699g3ajp: Using fixed module/class name when deserialising with dill
    mart-r authored Jun 19, 2025
    Configuration menu
    Copy the full SHA
    88e16ed View commit details
    Browse the repository at this point in the history

Commits on Jun 20, 2025

  1. CU-8699g5q3e: Avoid saving usage monitor. (#92)

    It takes up quite a bit of space on disk since it'd save other bits as part of its config
    mart-r authored Jun 20, 2025
    Configuration menu
    Copy the full SHA
    5936341 View commit details
    Browse the repository at this point in the history
  2. CU-8699gfb13 Environment info calculation at import time (#93)

    * CU-8699gfb13: Update the default value for environment in config.
    
    The new value is a default factory, which should be called lazily by pydantic instead of at import time.
    
    * CU-8699gfb13: Update config meta data default value.
    
    This will avoid import time initialisation and subsequent call to environment info.
    
    * CU-8699gfb13: Add a simple test to make sure the environmental info method isn't called at import time
    mart-r authored Jun 20, 2025
    Configuration menu
    Copy the full SHA
    adeabc9 View commit details
    Browse the repository at this point in the history

Commits on Jun 24, 2025

  1. CU-8699h2yv2: Avoid using pkg_resources (deprecated) (#94)

    * CU-8699h2yv2: Avoid using pkg_resources (deprecated)
    
    * CU-8699h2yv2: Update relevancy check during dependency calculations
    
    * CU-8699h2yv2: Simplify getting of transitive dependencies
    
    * CU-8699h2yv2: Unify metadata name access
    
    * CU-8699h2yv2: Imrpove getting of installed dependencies
    
    * CU-8699h2yv2: Add convenience method to figure out if a dependency is installed
    
    * CU-8699h2yv2: Remove unnecessary option for installation targets
    
    * CU-8699h2yv2: Remove unnecessary option for installed dependency targets
    
    * CU-8699h2yv2: Update tests to correctly identify installed dependencies
    mart-r authored Jun 24, 2025
    Configuration menu
    Copy the full SHA
    682fe11 View commit details
    Browse the repository at this point in the history

Commits on Jun 25, 2025

  1. CU-8699hj2dx Revamp component initialisation (#95)

    * CU-8699hj2dx: Initial changes to remove config-based init args and hardcode it (WIP)
    
    * CU-8699hj2dx: Update/fix a registration test
    
    * CU-8699hj2dx: Some minor keyword argument renaming
    
    * CU-8699hj2dx: Fix RelCAT tests (init)
    
    * CU-8699hj2dx: Update Transformers NER to work when loading models
    
    * CU-8699hj2dx: Fix DeID deserialising test
    
    * CU-8699hj2dx: Fix MeaCAT init
    
    * CU-8699hj2dx: Fix RelCAT init/load
    
    * CU-8699hj2dx: Remove unused import
    
    * CU-8699hj2dx: Add doc string regarding keyword arguments when manually deserialising
    
    * CU-8699hj2dx: Update pipeline with notes regarding keyword arguments for manual deserialisation
    mart-r authored Jun 25, 2025
    Configuration menu
    Copy the full SHA
    14d4cf2 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    7d4aa88 View commit details
    Browse the repository at this point in the history
Loading