Description

Story: BI-1230 - Truly Unknown Germplasm

Updates to support importing germplasm with truly unknown parents without using a dummy parent. This development also ensures that unrelated germplasm with unknown parents are not falsely attributed as siblings in the pedigree view display.

This included adding GET endpoint calls to /pedigree and /progeny in GermplasmController and adding additionalInfo items of femaleParentUnknown and maleParentUnknown on import. For import and display, the GID of an Unknown Parent is 0, but the backend endpoint retrieval labels an unknown parent GID as -F-Unknown or -M-Unknown, which is needed for maintaining information of pedigree connections for constructing the pedigree tree.

To import a file with unknown parents, a GID or entry number of 0 must be used. Presently only both parents unknown or female parent known and male parent unknown are supported.

Unknown parents will be displayed as "Unknown" in the parent GID columns in the All Germplasm table and in the pedigree in Germplasm Details page.

Due to Breedbase limitations, parents with more than 10 progeny will cause the pedigree viewer to error (to be fixed in BI-1579.

Dependencies

bi-web/BI-1230

Testing

see bi-web

Checklist:

• I have performed a self-review of my own code
• I have tested my code and ensured it meets the acceptance criteria of the story
• I have tested that my code works with both the brapi-java-server and BreedBase
• I have create/modified unit tests to cover this change
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to documentation
• I have run TAF: <please include a link to TAF run>