Publications

Juhasz-Dora, T., C. Hannon, L. Harman, Maguire, J., Doyle, T.K., Buijse, L., Lindberg, S.K. Bioaccumulation and depuration of emamectin benzoate and oxytetracycline in the European black sea cucumber (Holothuria forskali): Implications for Aquaculture Integration. Aquaculture, Fish and Fisheries. 2025; 5: e70132. https://doi.org/10.1002/aff2.70132

Budhathoki M, Tunca S, Martinez RL, Zhang, W., Li, S., Le Gallic, B., Brunso, L., Sharma, P., Eljasik, P., Gyalog, G., Panicz, R., Little, D. Societal perceptions of aquaculture: Combining scoping review and media analysis. Rev. Aquac. 2024; 16: 1879-1900. https://doi.org/10.1111/raq.12927

Tunca, S., Budhathoki, M., Brunsø, K. European consumers’ intention to buy sustainable aquaculture products: An exploratory study. Sustainable Production and Consumption. 2024; 50: 20-34. https://doi.org/10.1016/j.spc.2024.07.021

Ajithkumar, M. The genetic basis of mass mortality of mussels in France. PhD thesis University of La Rochelle. 2025. https://theses.fr/s395430

Ajasa, A.A., Boison, S.A., Gjøen, H.M. et al. Accuracy of genomic prediction using multiple Atlantic salmon populations. Genet. Sel. Evol. 2024; 56: 38. https://doi.org/10.1186/s12711-024-00907-5

Sharma, P. Process model-based assessment of environmental impacts and ecosystem services of fishpond aquaculture. PhD thesis MATE, Hungary. 2025. https://uni-mate.hu/esem%C3%A9ny/-/content-viewer/priya-sharma-phd-v%C3%A9d%C3%A9se/20123

Budhathoki, M., Xu, H., Song, Y., Ma, Z., Benter, A., Zhang, W., Li, S., Newton, R., Campbell, D., Little, D. Perceptions fuelling the demand for high value imported aquatic food in China. Sustainable Futures. 2025; 9: 100569. https://doi.org/10.1016/j.sftr.2025.100569

Ajasa, A.A., Boison, S.A., Gjøen, H.M., Lillehammer, M. Genome-assisted prediction of amoebic gill disease resistance in different populations of Atlantic salmon during field outbreak. Aquaculture. 2025; 578: 740078. https://doi.org/10.1016/j.aquaculture.2023.740078

Ajasa, A.A., Gjøen, H.M., Boison, S.A., Lillehammer, M. Genome-wide association analysis using multiple Atlantic salmon populations. Genet. Sel. Evol. 2025; 57: 9. https://doi.org/10.1186/s12711-025-00959-1

Ajasa, A. Quantitative genetics and statistical genomics of amoebic gill disease resistance and gill health in Atlantic salmon. 2025. PhD thesis NMBU (Nofima). https://hdl.handle.net/11250/3170252

Sharma, P., Gyalog, G., Varga, M. Unified process model-based assessment of environmental interactions and ecosystem services of a managed fishpond-reed agroecosystem. Ecological Modelling. 2025; 506: 111151. https://doi.org/10.1016/j.ecolmodel.2025.111151

Syropoulou, E., Prakash, S., Smeenge, D., Sipkema, D., Schrama, J.W., Kokou, F. Carbohydrates in dietary ingredients for European seabass: impact on nutrient digestibility and waste production when reared in recirculating aquaculture systems. Aquaculture. 2025; 599, 742182. https://doi.org/10.1016/j.aquaculture.2025.742182

Toxqui-Rodríguez, S., Estensoro, I., Domingo-Bretón, R. et al. Interactions between gilthead seabream intestinal transcriptome and microbiota upon Enteromyxum leei infection: a multi–omic approach. Anim Microbiome. 2025; 7: 22. https://doi.org/10.1186/s42523-025-00388-x

Ajithkumar, M., Degremont, L., Garcia, C., Ledu, C., Benabdelmouna, A. Response to selection for cytogenetic status and their relationship with mortality in Mytilus edulis and Mytilus galloprovincialis in France. Aquaculture. 2025; 597: 741912. https://doi.org/10.1016/j.aquaculture.2024.741912

Ajithkumar, M., D’Ambrosio, J., Travers, M.A., Morvezen, R., Degremont, L. Genomic selection for resistance to one pathogenic strain of Vibrio splendidus in blue mussel Mytilus edulis. Front. Genet. 2025; 15: 2024. https://doi.org/10.3389/fgene.2024.1487807

Budhathoki, M., Lincen, L., Xu, H., Zhang, W., Li, S., Newton, R., Campbell, D., Little, D. Understanding farmed salmon imports and e-commerce consumer satisfaction in China: A text mining approach. J. Agr. Food Res. 2024; 18: 101342. https://doi.org/10.1016/j.jafr.2024.101342

Budhathoki, M., Xu, H., Ma, Z., Campbell, D., Zhang, W., Li, S., Newton, R. and Little, D. Consumers’ Preferences Toward Farmed Salmon in China: Integrating Sensory and Choice Experiments. Food Frontiers. 2025; 6: 1008-1026. https://doi.org/10.1002/fft2.530

Juhasz-Dora, T., Lindberg, SK., James, P. et al. Environmental challenge trials induce a biofluorescent response in the green sea urchin Strongylocentrotus droebachiensis. Sci Rep. 2024; 14: 26671. https://doi.org/10.1038/s41598-024-77648-4

Syropoulou, E., Sipkema, D., Smit, S.E., Schrama, J.W., Kokou, F. Aquaculture faecal waste generates different products during anaerobic digestion depending on nutrient composition. J. Environ. Manage. 2024; 370: 122826. https://doi.org/10.1016/j.jenvman.2024.122826

Ajithkumar, M., Lillehammer, M., Travers, M.A., Maurouard, E., Aslam, M.L., Degremont, L. Genetic parameters for resistance to field mortality outbreaks and resistance to a pathogenic strain of Vibrio splendidus in Mytilus edulis, Mytilus galloprovincialis and natural hybrid. Aquaculture. 2024; 590: 741034. https://doi.org/10.1016/j.aquaculture.2024.741034

Toxqui-Rodríguez, S., Holhorea, P.G., Naya-Català, F., Calduch-Giner, J.À., Sitjà-Bobadilla, A., Piazzon, C., Pérez-Sánchez, J. Differential Reshaping of Skin and Intestinal Microbiota by Stocking Density and Oxygen Availability in Farmed Gilthead Sea Bream (Sparus aurata): A Behavioral and Network-Based Integrative Approach. Microorganisms. 2024; 12: 1360. https://doi.org/10.3390/microorganisms12071360

Juhasz-Dora, T., Thesslund, T., Maguire, J., Doyle, T.K. & Lindberg, S.-K. Investigation of biofluorescence produced by the red king crab Paralithodes camtschaticus. Aquaculture, Fish and Fisheries. 2024; 4: e159. https://doi.org/10.1002/aff2.159

Juhasz-Dora, T., Lindberg, SK., James, P. et al. Assessing the potential of fluorescence as a monitoring tool for reproductive tissue in selected macroalgae species. J Appl Phycol. 2024; 36: 2153–2159. https://doi.org/10.1007/s10811-024-03211-3

Juhasz-Dora T. The role of biofluorescence in the health and welfare of integrated multi-trophic aquaculture species. PhD thesis UCC, Ireland. 2024. https://cora.ucc.ie/items/84b6f6b3-0b8d-43a3-abcf-1129f7475865

Juhasz-Dora T, James P, Evensen T, Lindberg SK. Hidden in plain sight: hyperspectral documentation of complex biofluorescence produced by the green sea urchin (Strongylocentrotus droebachiensis). Methods Appl Fluoresc. 2024; 7: 12. https://doi.org/10.1088/2050-6120/ad232e

Juhasz-Dora, T., Lindberg, SK., Karlsen, A. et al. Biofluorescent response in lumpfish Cyclopterus lumpus to a therapeutic stressor as assessed by hyperspectral imaging. Sci Rep. 2024; 14, 2982. https://doi.org/10.1038/s41598-024-53562-7

P. Sharma, G. Gyalog, L. Berzi-Nagy, F. Tóth, Z. Nagy, B. Halasi-Kovács, D.L. Fazekas, D. Mezőszentgyörgyi, B. Csukas, M. Varga, Reusability check-based refinement of a biophysical fishpond model. Computers and Electronics in Agriculture. 2024; 218, 108664. https://doi.org/10.1016/j.compag.2024.108664

Toxqui-Rodríguez, S; Riera-Ferrer, E; Del Pozo, R; Palenzuela, O; Sitjà-Bobadilla, A; Estensoro, I; Piazzon, M.C. Molecular interactions in an holobiont-pathogen model: Integromics in gilthead seabream infected with Sparicotyle chrysophrii. Aquaculture. 2024; 581: 740365. https://doi.org/10.1016/j.aquaculture.2023.740365

Toxqui-Rodríguez, S; Naya-Català, F; Sitjà-Bobadilla, A; Piazzon, M.C; Pérez-Sánchez, J. Fish microbiomics: Strengths and liminations of MinION sequencing of gilthead seabream (Sparus aurata) intestinal microbiota. Aquaculture. 2023; 569: 739388. https://doi.org/10.1016/j.aquaculture.2023.739388

Sharma P, Varga M, Kerezsi G, Kajari B, Halasi-Kovacs B, Bekefi E, Gaal M, Gyalog G. Estimating reed bed cover in Hungarian fish ponds using NDVI-based remote sensing technique. Water. 2023; 15(8):1554. https://doi.org/10.3390/w15081554

Sharma P, Varga M, Kerezsi G, Kajari B, Halasi-Kovacs B, Bekefi E, Gaal M, Gyalog G. A dataset on the geographical distribution, bounds, and reed cover of Hungarian fishponds. Data in Brief 2023; 49, 109354. https://doi.org/10.1016/j.dib.2023.109354

Juhasz-Dora T, Teague J, Doyle TK, Maguire J. First record of biofluorescence in lumpfish (Cyclopterus lumpus), a commercially farmed cleaner fish. J Fish Biol. 2022; 101(4):1058-1062. https://doi.org/10.1111/jfb.15154

Budhathoki M, Campbell D, Belton B, Newton R, Li S, Zhang W, Little D. Factors Influencing Consumption Behaviour towards Aquatic Food among Asian Consumers: A Systematic Scoping Review. Foods. 2022; 11(24):4043. https://doi.org/10.3390/foods11244043

Lian, J., Schimmel, P., Sanchez-Garcia, S., Wijffels, R.H., Smidt, H., Sipkema, D. (2021). Different co-occurring bacteria enhance or decrease the growth of the microalga Nannochloropsis sp. CCAP211/78. Microb. Biotechnol. 14, 1159-1170. https://doi.org/10.1111/1751-7915.13784