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Apps by floflooo

MaxiPhi 0.4

FREE
A similarity-free approach to compare the diversity of environmental viral communitiesFeaturesBeta-diversity estimation (percent of species shared and permuted in abundance)Monte-Carlo simulationAll reads are informative (no local similarities...

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GAAS 0.17

FREE
GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias.FeaturesFASTA...

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Grinder 0.5.4

FREE
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.Featuresshotgun or amplicon (e.g. 16S rRNA) read librariesomics support to generate genomic,...

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MIDesigner 0.1

FREE
MIDesigner (MID Intelligent Designer) is a utility to design multiplex identifier (MID) primers for use in sequencing projects. Thus, it is similar in intent to Barcrawl.FeaturesMinimum Hamming distanceSpecific starting or ending...

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PHACCS 1.1.3

FREE
PHACCS is a bioinformatic tool designed for a scientific public. It gives estimates of the structure and diversity of uncultured viral communities using metagenomic information.

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Circonspect 0.2.6

FREE
Circonspect is a bioinformatic tool to produce contig spectra, useful for the estimating viral diversity in metagenomes. It uses an external assembly program and a bootstrap technique to automate the generation of contig spectra and cross-contig...

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LIGR Assembler 2.05

FREE
LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings. See the CHANGES file for details.

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Getopt::Euclid 0.2.1

FREE
Getopt::Euclid is a Perl module that uses your program's own documentation to create a command-line argument parser. This ensures that your program's documented interface and its actual interface always agree.Only development code is hosted on this...

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FastGroupII 0.1.0

FREE
A web-based Perl tool for the dereplication of large 16S rDNA libraries.

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