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Publications
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Deep neural heart rate variability analysis
NIPS (Neural Information Processing Systems) ML4H
Despite of the pain and limited accuracy of blood tests for early recognition of cardiovascular disease, they dominate risk screening and triage. On the other hand, heart rate variability is non-invasive and cheap, but not considered accurate enough for clinical practice. Here, we tackle heart beat interval based classification with deep learning. We introduce an end to end differentiable hybrid architecture, consisting of a layer of biological neuron models of cardiac dynamics (modified…
Despite of the pain and limited accuracy of blood tests for early recognition of cardiovascular disease, they dominate risk screening and triage. On the other hand, heart rate variability is non-invasive and cheap, but not considered accurate enough for clinical practice. Here, we tackle heart beat interval based classification with deep learning. We introduce an end to end differentiable hybrid architecture, consisting of a layer of biological neuron models of cardiac dynamics (modified FitzHugh Nagumo neurons) and several layers of a standard feed-forward neural network. The proposed model is evaluated on ECGs from 474 stable at-risk (coronary artery disease) patients, and 1172 chest pain patients of an emergency department. We show that it can significantly outperform models based on traditional heart rate variability predictors, as well as approaching or in some cases outperforming clinical blood tests, based only on 60 seconds of inter-beat intervals.
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Network analysis of heart beat intervals using horizontal visibility graphs
Computing in Cardiology
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Towards real-world capable spatial memory in the LIDA cognitive architecture
Biologically Inspired Cognitive Architectures
The ability to represent and utilize spatial information relevant to their goals is vital for intelligent agents. Doing so in the real world presents significant challenges, which have so far mostly been addressed by robotics approaches neglecting cognitive plausibility; whereas existing cognitive models mostly implement spatial abilities in simplistic environments, neglecting uncertainty and complexity.
Here, we take a step towards computational software agents capable of forming spatial…The ability to represent and utilize spatial information relevant to their goals is vital for intelligent agents. Doing so in the real world presents significant challenges, which have so far mostly been addressed by robotics approaches neglecting cognitive plausibility; whereas existing cognitive models mostly implement spatial abilities in simplistic environments, neglecting uncertainty and complexity.
Here, we take a step towards computational software agents capable of forming spatial memories in realistic environments, based on the biologically inspired LIDA cognitive architecture. We identify and address challenges faced by agents operating with noisy sensors and actuators in a complex physical world, including near-optimal integration of spatial cues from different modalities for localization and mapping, correcting cognitive maps when revisiting locations, the structuring of complex maps for computational efficiency, and multi-goal route planning on hierarchical cognitive maps. We also describe computational mechanisms addressing these challenges based on LIDA, and demonstrate their functionality by replicating several psychological experiments.Other authorsSee publication -
Constrained Incrementalist Moral Decision Making for a Biologically Inspired Cognitive Architecture
A Construction Manual for Robots' Ethical Systems (Springer)
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LIDA: A Systems-level Architecture for Cognition, Emotion, and Learning
IEEE Transactions on Autonomous Mental Development
We describe a cognitive architecture (LIDA) that affords attention, action selection and human-like learning intended for use in controlling cognitive agents that replicate human experiments as well as performing real-world tasks. LIDA combines sophisticated action selection, motivation via emotions, a centrally important attention mechanism, and multimodal instructionalist and selectionist learning. Empirically grounded in cognitive science and cognitive neuroscience, the LIDA architecture…
We describe a cognitive architecture (LIDA) that affords attention, action selection and human-like learning intended for use in controlling cognitive agents that replicate human experiments as well as performing real-world tasks. LIDA combines sophisticated action selection, motivation via emotions, a centrally important attention mechanism, and multimodal instructionalist and selectionist learning. Empirically grounded in cognitive science and cognitive neuroscience, the LIDA architecture employs a variety of modules and processes, each with its own effective representations and algorithms. LIDA has much to say about motivation, emotion, attention, and autonomous learning in cognitive agents. In this paper we summarize the LIDA model together with its resulting agent architecture, describe its computational implementation, and discuss results of simulations that replicate known experimental data. We also discuss some of LIDA’s conceptual modules, propose non-linear dynamics as a bridge between LIDA’s modules and processes and the underlying neuroscience, and point out some of the differences between LIDA and other cognitive architectures. Finally, we discuss how LIDA addresses some of the open issues in cognitive architecture research.
Other authorsSee publication -
The Timing of the Cognitive Cycle
PLoS ONE
We propose that human cognition consists of cascading cycles of recurring brain events. Each cognitive cycle senses the current situation, interprets it with reference to ongoing goals, and then selects an internal or external action in response. While most aspects of the cognitive cycle are unconscious, each cycle also yields a momentary “ignition” of conscious broadcasting. Neuroscientists have independently proposed ideas similar to the cognitive cycle, the fundamental hypothesis of the LIDA…
We propose that human cognition consists of cascading cycles of recurring brain events. Each cognitive cycle senses the current situation, interprets it with reference to ongoing goals, and then selects an internal or external action in response. While most aspects of the cognitive cycle are unconscious, each cycle also yields a momentary “ignition” of conscious broadcasting. Neuroscientists have independently proposed ideas similar to the cognitive cycle, the fundamental hypothesis of the LIDA model of cognition. High-level cognition, such as deliberation, planning, etc., is typically enabled by multiple cognitive cycles. In this paper we describe a timing model LIDA's cognitive cycle. Based on empirical and simulation data we propose that an initial phase of perception (stimulus recognition) occurs 80–100 ms from stimulus onset under optimal conditions. It is followed by a conscious episode (broadcast) 200–280 ms after stimulus onset, and an action selection phase 60–110 ms from the start of the conscious phase. One cognitive cycle would therefore take 260–390 ms. The LIDA timing model is consistent with brain evidence indicating a fundamental role for a theta-gamma wave, spreading forward from sensory cortices to rostral corticothalamic regions. This posteriofrontal theta-gamma wave may be experienced as a conscious perceptual event starting at 200–280 ms post stimulus. The action selection component of the cycle is proposed to involve frontal, striatal and cerebellar regions. Thus the cycle is inherently recurrent, as the anatomy of the thalamocortical system suggests. The LIDA model fits a large body of cognitive and neuroscientific evidence. Finally, we describe two LIDA-based software agents: the LIDA Reaction Time agent that simulates human performance in a simple reaction time task, and the LIDA Allport agent which models phenomenal simultaneity within timeframes comparable to human subjects. (...)
Other authorsSee publication -
Continuity and the Flow of Time - A Cognitive Science Perspective
Philosophy and Psychology of Time (Springer)
Patents
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Cardiovascular Disease Detection
Filed US US20180177415A1
See patentMethods and systems for detecting a heart condition include measuring a user's heart beat information. A predictive model is applied that includes multiple individual predictors and a classifier. Each predictor maps the user's heart beat information to a respective value. The classifier indicates a likelihood of a heart condition based on the predictors and the user's heart beat information. An alert is issued if the likelihood is above a threshold value.
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Computer-implemented method for language complexity quantification
Filed OA1044939
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Synthetic data generation
Filed US20230315899A1
See patentTechniques for generating synthetic data are described. An exemplary approach includes receiving one or more requests to generate synthetic data based on a first dataset; generating the synthetic dataset is generated according to the request by choosing a set of synthetic datapoints between pairs of datapoints of the first dataset along a line connecting them while sampling a likely value of a local probability distribution; and providing the synthetic dataset as configured by the request.
Projects
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Multimodal Cancer Classification for a Genomics Institute
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Developed a model integrating genomic and histopathology data that outperformed the state-of-the-art benchmark set by Harvard Medical School. The model also featured enhanced interpretability, critical for clinical adoption.
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Genomic ML at Amazon Web Services
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Led the largest genomics ML project in EMEA PS, pioneering a genomics diagnostic decision support system. The model went through clinical trials and deployment at a diagnostic lab, and significantly reduced time to diagnosis.
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Triage Model for Ambulance Services
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Created a machine learning model for a major Middle Eastern ambulance service, which significantly outperformed the triage accuracy of UK NHS systems, improving patient outcomes in real-time decision-making.
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Interpretable machine learning
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See projectHighly interpretable classifiers for scikit learn, producing easily understood decision rules instead of black box models
https://github.com/tmadl/sklearn-expertsys -
Visualizing high-dimensional decision boundaries
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See projectAn experimental, scikit-learn compatible approach to estimate and visualize high-dimensional decision boundaries of machine learning classifiers in higher dimensions (scikit-learn compatible). https://github.com/tmadl/highdimensional-decision-boundary-plot
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Semi-supervised learning frameworks in Python
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See projectSemi-supervised learning frameworks for python, which allow fitting scikit-learn classifiers to partially labeled data. https://github.com/tmadl/semisup-learn
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Browser-based 3D experiment platform for collecting behavioral data on spatial memory
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See projectCode for running 3D psychological experiments in the browser, intended to investigate the structure of spatial memory. It has originally been written to facilitate a series of in-browser experiments by (Madl et al., 2016).
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OIST Computational Neuroscience Course
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A project-oriented course designed to teach computational neuroscience based on the STEPS, NEURON, NEST and MATLAB software packages.
Lectures introducing basic modeling methods
Lectures by world leading experts covering a wide range of computational and experimental neuroscience topics
Hands-on tutorials of modeling software
Independent projects based on participant research interests
Individual tutoringOther creators -
Neural Dynamics Approaches to Cognitive Robotics
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This summer school introduced neuronal dynamics - a powerful theoretical language with which embodied and situated cognitive systems can be designed and modeled - and enabled participants to become productive within this framework with hands-on tutorials and a mini project.
Honors & Awards
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Inventor Award
AWS
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S&B Award 2017
Rudolf Sallinger Fonds
National award for research based startups, awarded to HeartShield
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Best paper award 2nd
University of Manchester
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Standalone Research Project Award
Austrian Science Fund
Languages
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English
Full professional proficiency
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German
Native or bilingual proficiency
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Hungarian
Native or bilingual proficiency
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