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Select your platform to access courses, learning paths, and documentation tailored to it.
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nCounter® Analysis System
Amplification-free RNA and protein profiling with high reproducibility. Measure up to 800 RNA targets and ~500 proteins with minimal hands-on time.
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX nCounter CodeSet nCounter Analysis System
GeoMx® Digital Spatial Profiler
High-plex spatial profiling of RNA and protein across tissue regions. Whole transcriptome RNA and up to ~1,200 proteins with an automated, histology-compatible workflow.
CosMx® Spatial Molecular Imager
Single-cell and subcellular spatial imaging of whole transcriptome RNA and 64-plex protein. Quantify and visualize expression directly in tissue.
AtoMx® Spatial Informatics Platform
Cloud platform for analyzing and visualizing CosMx SMI data. Explore datasets with no coding required.
CellScape™ Platforms
Flexible spatial proteomics for rapid and quantitative spatial phenotyping.
Unlocking Predictive Potential for Response to Immunotherapy
MK1351 | Mar 2019
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Document
List of Equipment, Materials, and Reagents for all GeoMx DSP Workflows
MAN-10166-05 | Oct 2024
GeoMx® Digital Spatial Profiler CRO/Core Lab Resources Site Readiness Checklist
Selection and Validation of CosMx Custom-Labeled Antibodies
MK5881 | July 2023
White Papers and Tech Notes CosMx® Spatial Molecular Imager Sample Prep
Setting up Amazon Web Services (AWS) to run the GeoMx NGS Pipeline Software
MAN-10167-03 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions GeoMx Readout: NGS
CosMx SMI Protein Fresh Frozen Assay Bench Notes
MAN-10183-04 | June 2025
Quick Reference Guide CosMx® Spatial Molecular Imager Sample Prep
AtoMx SIP Platform Administration Manual (software v2.3)
MAN-10170-12 | May 2026
Data Analysis Manuals & Instructions Document AtoMx® Spatial Informatics Platform
MicroRNA Biomarker Discovery and Validation
MK1187
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes miRNA
Quick Guide: GeoMx - nCounter Protein Readout
MAN-10103-06 | June 2022
GeoMx® Digital Spatial Profiler Quick Reference Guide GeoMx Readout: nCounter Document
CosMx SMI Semi-Automated Slide Preparation for RNA Assays
MAN-10186-08 | Apr 2026
Manuals & Instructions CosMx® Spatial Molecular Imager Sample Prep
CosMx SMI Data Analysis Resource Guide
PMR-11889-01 | Aug 2025
Data Analysis Quick Reference Guide CosMx® Spatial Molecular Imager
High-resolution, high-throughput spatial transcriptomics of complex tissues
M-GL-00130 v1.0
GeoMx® Digital Spatial Profiler White Papers and Tech Notes GeoMx Readout: NGS Document
Best Practices for PanCancer IO360 Gene Expresion Panel for FFPE
LBL-10504-03
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions White Papers and Tech Notes CRO/Core Lab Resources Sample Prep
GeoMx DSP Instrument Software Release Notes for v3.1.4
PMR-11672-06
GeoMx® Digital Spatial Profiler Instrument Operation Release Notes / Software
Selection and Optimization of Custom Probes for GeoMx RNA Assays
MK3582 | Mar 2022
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Sample Prep
nCounter Low RNA Input Kit User Manual
MAN-10046-05 | Apr 2023
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Low Input Document Sample Prep
CosMx SMI / AtoMx SIP Release Notes Archive
Previous versions of software release notes
Instrument Operation CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform Release Notes / Software
[separator] New Features!
Check out our latest software release.
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[separator] Data Analysis
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[separator] Instrument Operation
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CodeSet Hybridization
How to set up a nCounter® hybridization (MAX/FLEX/Pro)
11 min
nCounter® Pro/MAX/FLEX Basic Course Codeset Sample Prep
How to operate the nCounter® MAX/FLEX/Pro
This course covers how to use the nCounter® Prep Station and Digital Analyzer
28 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic Course
nCounter® MAX/FLEX/Pro Master Kits
Learn more about the consumables and reagents used for nCounter®
6 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic Course
[separator] nSolver Courses
Below are interactive courses to help you understand how to analyze your nCounter® data using the nSolver software.
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ROSALIND Academy
Have more questions about the ROSALIND software? Visit the ROSALIND Academy to get your answers!
Data Analysis Basic Tile URL ROSALIND®
Sample Preparation
Learn about nCounter® sample preparation
15 min
Instrument Operation Basic Course Sample Prep
Using ROSALIND® to Analyze nCounter® Data
Sign up for this course to learn how to analyze your data using the ROSALIND® cloud-based software!
1 hr 34 min
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Basic nCounter Analysis System ROSALIND®
CosMx® SMI 101: Introduction to the Technology
This course will introduce you to the CosMx® Spatial Molecular Imager to provide you with a basic understanding of the technology.
22 min
Introductory CosMx® Spatial Molecular Imager Course
Fully Automated Slide Preparation Workflow (RNA-NGS)
This course will walk you through the GeoMx® DSP fully automated workflow with Leica and NGS readout. We will go over the fundamentals of the workflow to give you a basic understanding of the process.
24 min
Data Analysis Instrument Operation Basic Leica BOND RX CRO/Core Lab Resources Course Sample Prep
Identifying and Troubleshooting Sequencing Data Flags
This course explains how to interpret sequencing QC flags and solutions to improve data quality.
20 min
GeoMx® Digital Spatial Profiler Webinar Data Analysis Advanced Troubleshoot
Manual Slide Preparation Workflow (Protein-NGS)
This course will walk you through the GeoMx® DSP protein workflow with manual slide prep and NGS readout. We will go over the fundamentals of the workflow to give you a basic understanding of the process.
18 min
GeoMx® Digital Spatial Profiler Data Analysis Instrument Operation Basic Course Sample Prep
GeoMx Academy: NGS Data Analysis Coffee Chat
Sign up for an opportunity to network with other NanoString customers and meet with an instructor to discuss best practices for GeoMx NGS data analysis.
2 hr 0 min
GeoMx Readout: NGS
nCounter® Data Analysis Pipeline
This interactive course provides an introduction to nCounter data, how to check quality, and how to run the full analysis pipeline from start to finish.
47 min
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Basic Course nCounter Analysis System
nCounter Gene Fusion Panels Overview
MAN-10085-02 | Oct 2023
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep Gene Fusion
Multi-Step Antibody Validation for High-Plex nCounter Immune Pathways & Tumor Signaling Protein Panels
MK7207 | Jun 2026
nCounter® Pro/MAX/FLEX White Papers and Tech Notes Document Multiomics nCounter Analysis System Sample Prep
Multiplex Immunofluorescence Imaging of Cell Suspensions on the CellScape Platforms Enabled by SmartBioSurface Slides
PMR-11966-01 | Jun 2026
White Papers and Tech Notes Document Sample Prep CellScape™ Platform CellScape™ XR Platform
Data-driven assay expansion: A modular approach to quantitative spatial phenotyping
MK6633 | Jan 2025
White Papers and Tech Notes Document CellScape™ Platform CellScape™ XR Platform
Protocol: Naveni PD1/PD-L1 Atto647N Using the CellScape Platform
PMR-11912-01 | Nov 2025
Document Sample Prep CellScape™ Platform Protocols CellScape™ XR Platform
[separator] CosMx™ SMI Training Videos
Select the appropriate step in the CosMx™ SMI workflow to start learning!
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How to Replace the X-Cite 12PC Q Lamp Bulb
Step inside to view a short video demo of the bulb removal and replacement process and links to relevant protocols. This course is applicable only to the CellScape™ Platform (the XR platform has an LED light source).
4 min
Instrument Operation Basic How-To Video CellScape™ Platform
LIVE AtoMx Data Analysis Training (EMEA/APAC)
Next session June 16th, 2026 | 10 am CET / 4 pm SGT | Learn and bring your data analysis questions to our field applications team members representing the Europe, Middle-East, Africa, and Asia-Pacific region!
Webinar Data Analysis Basic CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform auto-registration
CosMx Scratch Space
This blog serves as a resource for accelerating open-source analysis of CosMx™ Spatial Molecular Imager (SMI) data, featuring write-ups and vignettes on various aspects of single-cell spatial data analysis.
Data Analysis White Papers and Tech Notes AtoMx® Spatial Informatics Platform
[separator] Webinars and Live Training
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New Features of the AtoMx® SIP v2.2 Software Release
Learn about the latest flow cell transfer updates, explore the Spatial Discovery (beta) study type, and see how to prepare and feed your data into large language models.
7 min
Data Analysis Basic AtoMx® Spatial Informatics Platform Release Notes / Software
[separator] Additional Resources
To be used alongside video tutorials, live trainings, and webinars
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AtoMx SIP Best Practices: Tips for CosMx Data Analysis
Volume 1 | Oct 2024
Data Analysis White Papers and Tech Notes Document CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform
CosMx® SMI Data Analysis Masterclass Series
A recurring deep‑dive series on using the AtoMx SIP to manage and analyze CosMx SMI datasets with the latest software features and best practices.
196 min
Data Analysis Advanced CosMx® Spatial Molecular Imager
CosMx® SMI Data Analysis Training Session
Learn more about CosMx® data analysis in the AtoMx® SIP including data QC, using built-in or custom modules, and where to find open source resources! Our Sr Field Application Scientist Dr. Amanda Mason covers this and more in this on-demand recording of one of our LIVE training sessions.
60 min
Webinar Data Analysis Basic Course AtoMx® Spatial Informatics Platform
AtoMx® SIP 101: Introduction to the Platform
This course will introduce you to the AtoMx® Spatial Informatics Platform to provide you with a basic understanding of the technology.
20 min
Data Analysis Introductory Course AtoMx® Spatial Informatics Platform
[separator] Sample Preparation
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CosMx® SMI Data Analysis for RNA
This course covers basic analysis of CosMx® SMI RNA datasets within AtoMx® SIP, including: navigating the image viewer, segmentation, data export, QC, normalization, cell typing, accessory modules, and starting with open-source resources.
1 hr 37 min
Data Analysis Basic Course AtoMx® Spatial Informatics Platform
How to Add Custom FOV Annotations in the AtoMx® SIP
Watch this short video to learn how to add custom FOV annotations and use them to guide analyses in the InSituType Cell Typing and Differential Expression modules.
5 min
Demo Data Analysis Basic CosMx® Spatial Molecular Imager How-To Video
CosMx® SMI: How to Load a Flow Cell into the Instrument
This short course will show you how to load assembled flow cells into the CosMx® Spatial Molecular Imager.
5 min
Instrument Operation Basic CosMx® Spatial Molecular Imager Course How-To Video
An Intro to Exploring CosMx® SMI data with Python
This webinar, presented by Samuel Peters from the Masonic Institute on the Biology of Aging and Metabolism and University Imaging Centers, introduces open-source Python tools—including the napari-CosMx plugin—for analyzing and visualizing CosMx SMI Data.
1 hr 7 min
Webinar Data Analysis Advanced CosMx® Spatial Molecular Imager Course
Getting Started With CosMx® Data Analysis Using AtoMx®
This course will cover the first steps in analyzing CosMx data using the AtoMx Spatial Informatics Platform and focuses on how to log in to AtoMx, create a study, and run your first pipeline!
10 min
Data Analysis Introductory Course AtoMx® Spatial Informatics Platform
Exploring the CosMx Analysis Scratch Space
In this webinar, Daniel Newhouse, Ph.D., discusses the objectives of CosMx Scratch Space and highlights key areas where we are actively developing content for the community
37 min
Data Analysis Advanced CosMx® Spatial Molecular Imager Course AtoMx® Spatial Informatics Platform
CosMx® SMI: How-to Assemble a Flow Cell
This short course will show you how to use the Flow Cell Assembly Tool.
6 min
Basic CosMx® Spatial Molecular Imager Course How-To Video Sample Prep
CosMx® SMI: How to Clean the Instrument After a Run
Learn how to take care of your instrument after your cycling is complete!
6 min
Instrument Operation Basic CosMx® Spatial Molecular Imager Course How-To Video
AtoMx® SIP Data Export: Your Gateway to Data Analysis
Interested in using open source tools to dig into your spatial single cell omics data? Sr. Computational Biologist Felicia New PhD walks through data export from AtoMx, resulting file formats, and analysis resources to get you started!
40 min
Webinar Data Analysis Advanced CosMx® Spatial Molecular Imager Course AtoMx® Spatial Informatics Platform
LIVE AtoMx Data Analysis Training (North America)
Next Session is Thurs June 18th, 2026 at 11 am PST | 2 pm EST focused on Data Quality. Sign up for our free monthly sessions on basic CosMx data analysis led by our field application scientists. It's interactive so bring your questions!
Webinar Data Analysis Basic AtoMx® Spatial Informatics Platform auto-registration Tile URL
VistaPlex Assay Kit Design and Validation Process
MK6600 | Feb 2025
White Papers and Tech Notes Document Sample Prep CellScape™ Platform VistaPlex Kits CellScape™ XR Platform
CellScape XR Site Readiness Checklist
FRM-11348-01 | Apr 2026
Site Readiness Document CellScape™ XR Platform
How to create a GeoMx® Data Analysis Report
Useful tool for CROs and Service Providers
6 min
GeoMx® Digital Spatial Profiler Data Analysis GeoMx Readout: NGS Basic CRO/Core Lab Resources How-To Video
GeoMx DSP Experimental Design & Case Studies
This seminar discusses strategies in spatial biology experiments.
31 min
GeoMx® Digital Spatial Profiler Webinar Data Analysis Basic Course Experimental Design Sample Prep
GeoMx DSP Core Lab Starter Kit
Resources to help you launch your GeoMx Core Lab
1 hr 45 min
GeoMx® Digital Spatial Profiler Data Analysis Instrument Operation Introductory CRO/Core Lab Resources Course Experimental Design Sample Prep
How to Run GeoMx® DSP Data Analysis Workflows
A new feature of GeoMx software v2.5
4 min
GeoMx® Digital Spatial Profiler Data Analysis GeoMx Readout: NGS Basic How-To Video
[separator] Experimental Design
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Semi-automated Slide Preparation Workflow (Protein-NGS)
This course will walk you through the GeoMx® DSP semi-automated protein workflow with Leica and NGS readout. We will go over the fundamentals of the workflow to give you a basic understanding of the process.
19 min
GeoMx® Digital Spatial Profiler Data Analysis Instrument Operation Basic Course Sample Prep
GeoMx® DSP Calibration Files
GeoMx DSP calibration files are required to calibrate data for each lot of GeoMx HybCode. Please select the file on this page that matches the lot of GeoMx HybCode currently in use.
GeoMx® Digital Spatial Profiler Data Analysis Instrument Operation Basic
How to use GeoMx Scan Only Mode
Watch this video to learn about a new feature of software v3.0!
4 min
GeoMx® Digital Spatial Profiler Instrument Operation Basic How-To Video
How to perform cell-type contouring using ImageJ
Strategy for ROI selection on GeoMx® DSP
2 min
GeoMx® Digital Spatial Profiler Instrument Operation Advanced How-To Video Region of Interest Selection
Immuno-Oncology Proteome Atlas (IPA)
Click here to learn more about the IO Proteome Atlas for the GeoMx® DSP!
10 min
GeoMx® Digital Spatial Profiler Protein Experimental Design
Region of Interest Selection Course Series
These courses will teach you about ROI selection, starting with the basics and then exploring advanced techniques.
4 Courses
GeoMx® Digital Spatial Profiler Instrument Operation Basic Learning Path Region of Interest Region of Interest Selection
How to overlay images in the GeoMx DSP scan workspace
Import and overlay images in the ROI selection step of the GeoMx DSP workflow.
4 min
GeoMx® Digital Spatial Profiler Instrument Operation Basic How-To Video Region of Interest Selection
GeoMx® Data Analysis for nCounter Readout
Overview and Software Demonstration
1 hr 31 min
GeoMx® Digital Spatial Profiler Data Analysis Basic GeoMx Readout: nCounter Course
Normalization of GeoMx DSP Protein Data using a Custom Script
This course covers best practices in GeoMx DSP protein data normalization, using the custom script feature of the data analysis software.
16 min
GeoMx® Digital Spatial Profiler Data Analysis Advanced GeoMx Readout: nCounter Course
[separator] ROSALIND Courses
Below you will find an interactive course and additional resources to teach you how to analyze your nCounter® data using the ROSALIND software.
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Visit Our New Customer Experience Lab in Amsterdam!
Our lab in Amsterdam is ready to welcome you!
2 min
Demo
Materials List: GeoMx RNA (Manual) with NGS Readout
MAN-10128-09 | Oct 2024
GeoMx® Digital Spatial Profiler Site Readiness Checklist
Imaging-based Spatial Transcriptomics Analysis with CosMx® SMI: a dataset-driven modular approach
On demand webinar focused on developing pipelines and discussing current challenges in the field!
56 min
Webinar Data Analysis Advanced CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform
How to Perform a CosMx® SMI Software Update
Watch this quick video demo to learn how to easily upgrade your CosMx SMI instrument when new updates are released!
3 min
Instrument Operation Basic CosMx® Spatial Molecular Imager How-To Video Release Notes / Software
CosMx® SMI: How-to Apply an Incubation Frame
This short course will show you how to use the incubation frames in the CosMx™ Spatial Molecular Imager sample preparation workflow.
5 min
Basic CosMx® Spatial Molecular Imager Course How-To Video Sample Prep
GeoMx Digital Spatial Profiler
Brief overview of the platform
2 min
GeoMx® Digital Spatial Profiler Demo
Quick Guide: GeoMx Support
MK2430 | May 2020
GeoMx® Digital Spatial Profiler Instrument Operation Basic Quick Reference Guide Guideline Document
AtoMx SIP and CosMx SMI Data Analysis Release Notes for v2.1
PMR-11369-09
Data Analysis AtoMx® Spatial Informatics Platform Release Notes / Software
CosMx SMI Instrument Quick Guide (software v2.0)
MAN-10191-02 | June 2025
Instrument Operation Quick Reference Guide CosMx® Spatial Molecular Imager
GeoMx DSP Protein Barcoding Kit User Manual
MAN-10156-05 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions Sample Prep
Multiplexed Cancer Immune Response Analysis: nCounter PanCancer Immune Profiling Panel
MK1188 | May 2019
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Sample Prep
CosMx SMI Instrument User Manual (software v2.2)
MAN-10161-12 | Feb 2026
Manuals & Instructions Instrument Operation CosMx® Spatial Molecular Imager
NanoString's Spatial Organ Atlas
Explore spatial molecular anatomy with GeoMx® DSP technology.
2 min
GeoMx Academy: NGS Workflow for RNA
This course is for users already trained on running GeoMx® DSP for either protein or RNA nCounter readout, who would like to run RNA samples with NGS readout.
2 hr 0 min
GeoMx Readout: NGS
Materials List: GeoMx RNA (Fully Automated) with nCounter Readout
MAN-10164-05 | Oct 2024
GeoMx® Digital Spatial Profiler Leica BOND RX Site Readiness Checklist
[separator] CosM® SMI
Select your desired Site Readiness Page.
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Site Readiness: Fully Automated GeoMx® DSP RNA-NGS Workflow
7 Courses
GeoMx Readout: NGS Leica BOND RX RNA
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
7 Courses
GeoMx Readout: NGS Leica BOND RX RNA
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
7 Courses
GeoMx Readout: NGS Manual Slide Prep RNA
CellScape Tissue Alignment Reference Card
PMR-11939-01 | Apr 2026
Sample Prep CellScape™ Platform CellScape™ XR Platform Tissue Reference Card
GeoMx DSP Tissue Alignment Reference Card
PMR-11937-01 | Apr 2026
GeoMx® Digital Spatial Profiler Sample Prep Tissue Reference Card
Bruker Spatial Biology Knowledge Base
Click here to visit the FAQ page for nCounter, GeoMx, and CosMx!
Tile URL
nSolver Advanced Analysis 2.0 Quick Start Guide
MAN-10074-01
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Quick Reference Guide
GeoMx DSP Data Analysis User Manual (v3.1.4 software)
MAN-10154-07 | Oct 2025
GeoMx® Digital Spatial Profiler Data Analysis Manuals & Instructions
nCounter Pro Software Release Notes for v6.0.2
PMR-11690-01
nCounter® Pro/MAX/FLEX Instrument Operation Release Notes / Software
Quick Guide: nCounter MAX/FLEX
GLMX_ST0002
nCounter® Pro/MAX/FLEX Instrument Operation Quick Reference Guide
GeoMx NGS Pipeline Software v3.2 Release Notes
PMR-11678-02
GeoMx® Digital Spatial Profiler GeoMx Readout: NGS Release Notes / Software
GeoMx DSP Instrument User Manual (v3.1.4 software)
MAN-10152-08 | Apr 2026
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation
Preparing RNA for nCounter Assays (FFPE or Fresh Frozen Samples)
MAN-10050-07 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep
NanoString Profiling in Immuno-Oncology
GLSC_PM0057 | Sept 2019
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes
nCounter Assays: PBMC Tips and Tricks
MK1193 | Feb 2019
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Sample Prep
Best Practices for Clinical Research Biomarker Studies using the nCounter Platform
MK3415 | June 2021
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes CRO/Core Lab Resources Sample Prep
Gene Expression Data Analysis Guidelines
MAN-C0011-04
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Document
Applications with Exosomes and Extracellular Vesicles in miRNA Research
MK1207 | Jan 2019
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes miRNA Sample Prep
AtoMx Spatial Informatics Platform Security
MK5065 | Aug 2024
White Papers and Tech Notes Site Readiness AtoMx® Spatial Informatics Platform
nCounter Data Analysis Resource Guide
PMR-11357-03 | Mar 2026
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX CRO/Core Lab Resources Quick Reference Guide
CosMx SMI Manual Slide Preparation for Multiomic Assays
MAN-10201-05 | Feb 2026
Manuals & Instructions CosMx® Spatial Molecular Imager Multiomics Sample Prep
CosMx SMI Grant Support Package
MK3934 | March 2025
CosMx® Spatial Molecular Imager
CosMx® SMI: How-to Remove Adhesive Flow Cells
Learn how to remove an adhesive flow cell coverslip for downstream tissue staining!
5 min
Basic CosMx® Spatial Molecular Imager Course How-To Video Sample Prep
GeoMx® DSP Data Analysis Workflow Session for RNA NGS Readout
In this video: Prajan Divakar, PhD takes you on a deep dive into GeoMx data analysis for the NGS Assay step-by-step.
1 hr 38 min
GeoMx® Digital Spatial Profiler Data Analysis GeoMx Readout: NGS Basic Course
How to Perform 3D Segmentation in the AtoMx® SIP
This course covers the 3D segmentation feature introduced in CosMx SMI and AtoMx SIP v2.3.
7 min
Data Analysis Advanced How-To Video AtoMx® Spatial Informatics Platform
Introducing GeoMx Software v2.3 including Data Analysis Report
Check out the new & improved features of the GeoMx DSP software!
10 min
GeoMx® Digital Spatial Profiler Basic How-To Video
[separator] GeoMx® DSP
Select your desired Site Readiness Page.
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GeoMx DSP Applications in Organoid Research
NanoString scientist LiuLiu Pan, PhD, discusses GeoMx DSP applications for the study of gene expression in organoids.
4 min
GeoMx® Digital Spatial Profiler Organoid
CosMx SMI Data Analysis User Manual (for AtoMx v2.3)
MAN-10162-13 | Jun 2026
Data Analysis Manuals & Instructions CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform
New Features of the AtoMx® SIP v2.1 Software Release
This video highlights new features including; enhanced whole tissue exploration, a new gene selection module, and expanded flexibility in the differential expression module!
3 min
Data Analysis Basic AtoMx® Spatial Informatics Platform Release Notes / Software
New Features of AtoMx® v1.3.2
Check out the new and improved features of the latest AtoMx® software update!
15 min
Data Analysis Basic Course AtoMx® Spatial Informatics Platform Release Notes / Software
New Features of the AtoMx® SIP v1.4.0 Software Release
This video will highlight several new features: including/excluding channels for cell segmentation, how to custom annotate data, a demo of the consolidated differential expression module and more!
18 min
Data Analysis Basic Course AtoMx® Spatial Informatics Platform Release Notes / Software
New Features of the AtoMx® SIP v2.0 Software Release
This video will highlight several new features including: the built-on FOV annotation tool, new segmentation models, built-in export directly to S3, and more!
7 min
Data Analysis Basic Course AtoMx® Spatial Informatics Platform Release Notes / Software
New Features of the CosMx® SMI v2.0 Software Release
This video will highlight several new features including: segmentation configuration G, a built-in FOV load tool, a run time estimator, and more!
3 min
Instrument Operation Basic CosMx® Spatial Molecular Imager Release Notes / Software
New Features of the CosMx® SMI v1.5.1 Software Release
Check out the new improvements in our latest software release!
5 min
Instrument Operation Basic CosMx® Spatial Molecular Imager Course Release Notes / Software
New Features of the CosMx® SMI v2.1 Software
This mini-lesson introduces the key features of the software release, including an enhanced cleaning protocol, improved flow cell configuration, and increased reliability.
3 min
Demo Instrument Operation Basic CosMx® Spatial Molecular Imager Course Release Notes / Software
CosMx SMI Software v2.1 Release Notes
PMR-11700-08
Instrument Operation CosMx® Spatial Molecular Imager Release Notes / Software
How to enroll in a NanoU live course
Follow these simple steps to register for and access your live course!
Guideline Document
CosMx SMI Tissue Alignment Reference Card
PMR-11938-01 | Apr 2026
CosMx® Spatial Molecular Imager Sample Prep Tissue Reference Card
CosMx SMI Protein FFPE Assay Bench Notes
MAN-10181-04 | June 2025
Quick Reference Guide CosMx® Spatial Molecular Imager Sample Prep
CosMx SMI Best Practices: 1000-plex RNA Assays
Volume 1 | Dec 2023
White Papers and Tech Notes CosMx® Spatial Molecular Imager Sample Prep
CosMx SMI Instrument User Manual (for software v 2.3)
MAN-10161-13 | May 2026
Manuals & Instructions Instrument Operation Document CosMx® Spatial Molecular Imager
nCounter Gene Fusion RNA TagSet Hybridization Protocol
MAN-10058-03
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep Gene Fusion
Morphology Marker Guidelines
GLSC_PM0057 | Mar 2023
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Basic RNAscope CRO/Core Lab Resources Guideline Document Morphology Markers Sample Prep
nCounter Multiomic Assay User Manual
MAN-10208-01 | Dec 2025
nCounter® Pro/MAX/FLEX Manuals & Instructions Multiomics Sample Prep
nCounter SPRINT Profiler Hibernation Protocol
MAN-10169-01 | Feb 2023
nCounter® SPRINT Profiler Manuals & Instructions Instrument Operation
The Cancer Transcriptome Atlas: Deep Spatial Characterization of the Colorectal Cancer Tumor Microenvironment
MK2414 | May 2020
GeoMx® Digital Spatial Profiler GeoMx® Cancer Transcriptome Atlas White Papers and Tech Notes Document auto-registration
Quick Guide: nCounter Pro System
MK4530 | Mar 2022
nCounter® Pro/MAX/FLEX Instrument Operation Quick Reference Guide
Introduction to GeoMx Cancer Transcriptome Atlas: Normalization
MK2833 | Oct 2020
GeoMx® Digital Spatial Profiler GeoMx® Cancer Transcriptome Atlas Data Analysis White Papers and Tech Notes Document
nCounter Data Analysis Pipeline User Manual
MAN-10209-01 | Dec 2025
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions
CosMx SMI Best Practices: Post Run H&E and Antibody Staining
Volume 3 | May 2024
White Papers and Tech Notes Document CosMx® Spatial Molecular Imager Sample Prep
Integrated and Automated Workflow for High Plex RNA and Protein Profiling
MK1433 | Mar 2019
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Leica BOND RX Document Sample Prep
A best practices framework for spatial biology studies in drug discovery and development: enabling successful cohort studies using digital spatial profiling
Journal of Histotechnology | Sep 2024
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Course
Materials List: GeoMx RNA (Fully Automated) with NGS Readout
MAN-10165-05 | Oct 2024
GeoMx® Digital Spatial Profiler Leica BOND RX Site Readiness Checklist
nCounter Gene Expression Profiling from Low Sample Input
MK0167
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Low Input Sample Prep
GeoMx DSP Hibernation Protocol
MAN-10155-07 | Dec 2025
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation Guideline
Materials List: GeoMx RNA (Semi-Automated) with NGS Readout
MAN-10129-09 | Oct 2024
GeoMx® Digital Spatial Profiler Leica BOND RX Site Readiness Checklist
Quick Guide: GeoMx - nCounter RNA Readout
MAN-10104-05 | June 2022
GeoMx® Digital Spatial Profiler Quick Reference Guide GeoMx Readout: nCounter Document
Advanced Analysis 2.0 User Manual
MAN-10030-04 | Dec 2024
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Document
GeoMx Auxiliary Server Software Installation and Update Instructions
MAN-10135-11
GeoMx® Digital Spatial Profiler Manuals & Instructions Advanced Site Readiness Release Notes / Software
The GeoMx Human Whole Transcriptome Atlas for the Digital Spatial Profiler: Design, Performance, and Experimental Guidelines
MK3209 | Sept 2022
GeoMx® Digital Spatial Profiler White Papers and Tech Notes CRO/Core Lab Resources Guideline Document
nSolver 4.0 Analysis Software User Manual
MAN-C0019-09 | Dec 2024
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Document
Materials List: GeoMx Protein (Semi-Automated) with NGS Readout
MAN-10141-08 | Oct 2024
GeoMx® Digital Spatial Profiler Leica BOND RX Site Readiness Checklist
CosMx SMI Best Practices: Sample Selection
Volume 2 | Feb 2024
White Papers and Tech Notes Document CosMx® Spatial Molecular Imager Sample Prep
GeoMx DSP NGS Readout User Manual
MAN-10153-09 | Feb 2026
GeoMx® Digital Spatial Profiler Manuals & Instructions GeoMx Readout: NGS
Combined Workflow of GeoMx Cancer Transcriptome Atlas and RNAscope Assays
MK2495 | May 2020
GeoMx® Digital Spatial Profiler GeoMx Whole Transcriptome Atlas White Papers and Tech Notes RNAscope Document Sample Prep
Materials List: GeoMx RNA (Semi-Automated) with nCounter Readout
MAN-10126-09 | Oct 2024
GeoMx® Digital Spatial Profiler Leica BOND RX Site Readiness Checklist
Quick Guide: GeoMx DSP - NGS Data Analysis
MAN-10134-03 | Nov 2023
GeoMx® Digital Spatial Profiler Data Analysis Quick Reference Guide
AtoMx SIP and CosMx SMI Data Analysis v2.3 Release Notes
PMR11369-11 | Apr 2026
Instrument Operation CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform Release Notes / Software
nCounter Gene Expression Panels Overview
MAN-10083-04 | Oct 2023
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Quick Reference Guide Sample Prep
nCounter MAX/FLEX Cybersecurity FAQ
LBL-10665-01 | Jan 2019
nCounter® Pro/MAX/FLEX Instrument Operation
Introducing the GeoMx Whole Transcriptome Atlas
Enjoy this musical introduction to the 18,000+ plex GeoMx assay!
2 min
GeoMx® Digital Spatial Profiler GeoMx Whole Transcriptome Atlas
GeoMx DSP Grant Support Package
MK0481 | Mar 2023
GeoMx® Digital Spatial Profiler
Dr. Alexandre Hirayama, MD: Understanding the Efficacy of CAR-T Cell Therapy for LBCL
Learn how the nCounter® Analysis System was used to study how the tumor microenvironment impacts outcomes of CD19 CAR-T cell therapy for patients with large B-cell lymphoma.
Webinar Basic nCounter Analysis System
nCounter® SPRINT Maintenance: Changing Buffers
Watch this video to learn how to change buffers on the nCounter SPRINT.
10 min
nCounter® SPRINT Profiler Instrument Operation Basic How-To Video
How to Clean your GeoMx DSP Slide Holder
Keep your instrument slide holder in great shape with these tips.
2 min
GeoMx® Digital Spatial Profiler Instrument Operation Basic How-To Video
nCounter® SPRINT Troubleshooting: Downloading Log Files
Watch this video to learn how to download log files from the nCounter SPRINT.
4 min
nCounter® SPRINT Profiler Instrument Operation Basic Troubleshoot How-To Video
Running CodeSet Assays on the nCounter® Pro/MAX/FLEX
This course covers the assay set-up and instrument steps of a CodeSet assay run on the nCounter MAX/FLEX/Pro.
46 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic Course Sample Prep
[separator] New AtoMx™ Features!
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[separator] Refresher Courses and Tailored Use Cases
Below, you'll find courses focusing on specific parts of the assay workflow
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[separator] Complete Learning Path (A-to-Z Training)
New to nCounter®? Begin here to get a step-by-step guide on everything from preparing your samples to analyzing your data!
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[separator] Sample Preparation and Hybridization
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nCounter® MAX/FLEX/Pro File Definitions
Watch this video to learn more about the files needed to run the nCounter MAX/FLEX/Pro.
13 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic How-To Video
Using the nCounter® SPRINT Control Center
Watch this video to learn how to use the nCounter SPRINT Control Center.
5 min
nCounter® SPRINT Profiler Instrument Operation Basic How-To Video
nCounter® SPRINT Maintenance: Hibernation
Will the nCounter® SPRINT be idle for more than one month? Hibernate it!
5 min
nCounter® SPRINT Profiler Instrument Operation Basic
[separator] Instrument Maintenance and Troubleshooting
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How to Exchange Data between GeoMx DSP Instruments
Tutorial to export and import data from the GeoMx DSP.
4 min
GeoMx® Digital Spatial Profiler Instrument Operation Basic How-To Video
How to Change Reagents on the GeoMx DSP
This tutorial shows how to change the buffers or reagents in the GeoMx DSP.
4 min
GeoMx® Digital Spatial Profiler Instrument Operation Basic How-To Video
nCounter® SPRINT Profiler - CodeSet Chemistry
This course will walk you through the steps for prepping your CodeSet and running it on your nCounter® SPRINT Profiler system. You will receive a certificate when you successfully complete this course. Let's get started!
59 min
nCounter® SPRINT Profiler Basic Course Sample Prep
nCounter® SPRINT CodeSet Hybridization Setup
Check out this video to see how to setup the CodeSet hybridization for your nCounter SPRINT run.
6 min
nCounter® SPRINT Profiler nCounter CodeSet Basic How-To Video Sample Prep
Downloading Data from the nCounter® SPRINT
Check out this video to learn how to download your data from the nCounter SPRINT.
2 min
nCounter® SPRINT Profiler Instrument Operation Basic How-To Video
Loading Samples into the nCounter® SPRINT Cartridge
This short course will show you how to load your samples into a nCounter SPRINT cartridge.
7 min
nCounter® SPRINT Profiler Basic How-To Video Sample Prep
nSolver 101: Basic Analysis
Sign up for this course to learn the basics of nSolver data analysis.
1 hr 8 min
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Basic Course
Downloading Data from the nCounter® MAX/FLEX/Pro Digital Analyzer
Watch this video to learn how to download your data from the nCounter MAX/FLEX/Pro.
2 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic How-To Video
nCounter® MAX/FLEX/Pro Troubleshooting: Downloading Log Files
Watch this video to learn how to download log files from the nCounter MAX/FLEX/Pro.
2 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic Troubleshoot Course How-To Video
nSolver 201: Advanced Analysis
Learn how to take your nSolver analysis to the next level!
48 min
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Advanced Course
CosMx SMI Software v2.3 Release Notes
PMR-11700-10 | May 2026
CosMx® Spatial Molecular Imager Release Notes / Software
Welcome!
Are you new to NanoU? Check out this short video as Allison Songstad, NanoU's manager, shows you her favorite courses and features in NanoU!
3 min
Introductory
CosMx SMI Manual Slide Preparation for RNA Assays
MAN-10184-07 | Apr 2026
Manuals & Instructions CosMx® Spatial Molecular Imager Sample Prep
[separator] Getting Started: Introductory Courses
New to NanoString? Check out the courses below to start learning about NanoString's platforms!
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CosMx SMI Semi-Automated Slide Preparation for Protein Assays
MAN-10187-06 | Apr 2026
Manuals & Instructions CosMx® Spatial Molecular Imager Sample Prep
Guidelines for PlexSet Data Analysis in nSolver Software
MAN-10044-03 | Mar 2023
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions PlexSet Document
Materials List: GeoMx Protein (Manual) with nCounter Readout
MAN-10098-11 | Oct 2024
GeoMx® Digital Spatial Profiler Site Readiness Checklist
nCounter Gene Expression Panel Standard and Calibration Sample Usage
PMR-11934-01 | Apr 2026
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Sample Prep Standards & Calibration Samples
nCounter SPRINT Profiler User Manual
MAN-10017-11 | Oct 2024
nCounter® SPRINT Profiler Manuals & Instructions Instrument Operation Document
How to Perform the miRNA Expression Assay
Check out this course to see the miRNA assay workflow from start to finish!
35 min
Basic miRNA Course Sample Prep
Materials List: GeoMx RNA (Manual) with nCounter Readout
MAN-10113-10 | Oct 2024
GeoMx® Digital Spatial Profiler Site Readiness Checklist
Materials List: GeoMx Protein (Manual) with NGS Readout
MAN-10140-08 | Oct 2024
GeoMx® Digital Spatial Profiler Site Readiness Checklist
CosMx SMI Hibernation Protocol (software v2.1 and later)
PMR-11819-04
Manuals & Instructions Instrument Operation CosMx® Spatial Molecular Imager
nCounter miRNA Expression Assay User Manual
MAN-C0009-09 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions miRNA Document Sample Prep
nCounter RUO Lymphoma Subtyping Test (LST) User Manual (MAN-10142)
This document has been retired. Please refer to the nCounter Gene Signature Assays User Manual (MAN-10188).
Not currently available
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep Gene Signature Assays (PAM50, LST, TIS)
nCounter Pro Analysis System User Manual
MAN-10147-06 | Dec 2024
nCounter® Pro/MAX/FLEX Manuals & Instructions Instrument Operation
Selection and Validation of GeoMx Custom-Labeled Antibodies
MK3600 | Dec 2023
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Document Sample Prep
Quick Guide: GeoMx DSP NGS Readout
MAN-10133-06-1 | June 2024
GeoMx® Digital Spatial Profiler GeoMx Readout: NGS Quick Reference Guide
The Development and Performance of a GeoMx® Based Proteogenomic Workflow for the Detection of Both RNA and Protein on a Single FFPE Slide
MK4240 | Jan 2022
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Multiomics
[separator] Resources to Troubleshoot
These resources show how to troubleshoot with the NanoString Technical Support Team.
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NanoString Webinars
Check out recorded content showcasing the NanoString technology!
GeoMx® Digital Spatial Profiler Webinar GeoMx Whole Transcriptome Atlas Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX
How to Load a Sample into the CellScape™ Instrument
How to properly load the assembled whole slide imaging chamber (WSIC) containing your sample into the CellScape Instrument.
2 min
Instrument Operation Basic Course How-To Video CellScape™ Platform
Protocol: CellScape Platform Customer Training Kit
Section from MAN-10200-04, CellScape Instrument Operation and Sample Preparation
Instrument Operation Introductory Document CellScape™ Platform Protocols VistaPlex Kits
Protocol: H&E Staining of FFPE Tissues
PMR-11945-01 | Apr 2026
Document Sample Prep CellScape™ Platform Protocols CellScape™ XR Platform
CellScape Site Readiness Checklist
FRM-11296-02 | Jul 2025
Site Readiness Checklist CellScape™ Platform
GeoMx with NGS Readout - Site Readiness Checklist
FRM-10768-06 | Oct 2024
GeoMx® Digital Spatial Profiler Site Readiness Checklist Document
Christopher E. Mason, PhD: Spatial and Multi-Omic Profiling of Skin and Blood During Human Spaceflight
Hear how the GeoMx® DSP was used to better understand what happens in the human body during spaceflight.
GeoMx® Digital Spatial Profiler Webinar Basic
miRNA Expression Analysis in Plasma/Serum Samples
MK1342 | Feb 2019
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes miRNA Document Sample Prep
GeoMx DSP Fully Automated Slide Preparation for RNA-NGS Assays with BOND RX
This document has been retired. Find the Fully Automated RNA Slide Preparation Protocol in the GeoMx DSP Automated Slide Preparation User Manual (MAN-10151).
Not currently available
GeoMx® Digital Spatial Profiler Manuals & Instructions Leica BOND RX Document Sample Prep
[separator] Learn How Your Peers are Using NanoString’s Platforms!
Watch the featured webinars below to see how your peers are using NanoString in their work!
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[separator] Resources to Run the Instrument
These resources cover important information to set your instrument run up for success!
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Using a Translator File in the GeoMx NGS Pipeline
PMR-11803-01 | Nov 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions GeoMx Readout: NGS
nCounter MAX/FLEX Dry Run Protocol
nCounter® Pro/MAX/FLEX Manuals & Instructions Instrument Operation Document
Quick Guide: GeoMx Semi-Automated Slide Preparation: RNA FFPE
MAN-10131-07 | Nov 2023
GeoMx® Digital Spatial Profiler Leica BOND RX Quick Reference Guide Document Sample Prep
nCounter Elements TagSets User Manual
MAN-10086-05 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Document Sample Prep
CDF Utility Tool for nCounter Digital Analyzer
nCounter® Pro/MAX/FLEX Instrument Operation
Unlocking the Power of GeoMx DSP: Best Practices for Protein Data Analysis
MK6592 | Feb 2025
GeoMx® Digital Spatial Profiler Data Analysis White Papers and Tech Notes Document
GeoMx with nCounter Readout - Site Readiness Checklist
FRM-10598-07 | Oct 2024
GeoMx® Digital Spatial Profiler Site Readiness Checklist Document
Copy Number Variation (CNV) Assay User Manual
MAN-10093-02 | Dec 2022
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep Copy Number Variation (CNV)
GeoMx DSP IT Specifications and Requirements - At a Glance
MK3689 | July 2023
GeoMx® Digital Spatial Profiler Instrument Operation Site Readiness Document
GEO Data Submission Guidelines for nCounter Data
PMR-11801-01 | Nov 2024
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Author Guidelines
nCounter microRNA Expression: Data Analysis Guidelines
PMR-11511-02 | Nov 2024
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions miRNA
Multiplex, Spatially Resolved Protein Analysis with GeoMx DSP and Abcam Recombinant Monoclonal Antibodies
MK1435 | Mar 2019
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Document Sample Prep
nCounter® MAX/FLEX/Pro Maintenance: Conditioning the O-Rings
Watch this video to learn more about nCounter MAX/FLEX/Pro maintenance.
3 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic Course How-To Video
Open-Source Data Analysis using QuPath and StarDist
PMR-11841-01 | March 2025
Data Analysis Manuals & Instructions Document CellScape™ Platform CellScape™ XR Platform
CellScape Sample Preparation and Instrument Operation
MAN-10200-04 | Dec 2025
Manuals & Instructions Instrument Operation Document Sample Prep CellScape™ Platform
CellScape™ PSP 101: Introduction to the Technology
This Course will introduce you to the CellScape™ Precise Spatial Proteomics instrument and provide you with a basic understanding of the technology.
16 min
Instrument Operation Introductory Course Sample Prep CellScape™ Platform
[separator] nCounter® Training Videos
Select the appropriate step in the nCounter® workflow to start learning!
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[separator] GeoMx® DSP Training Videos
Select the appropriate step in the GeoMx® DSP workflow to start learning!
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GeoMx® DSP: Data Analysis for Protein NGS Readout
This interactive course covers GeoMx DSP data analysis for Protein-NGS Readout. Applicable to datasets generated from both SeqCode (Modular IO) and ProCode (IPA, NPA, DPA) panels.
1 hr 10 min
Data Analysis Basic Course
Initiating a Run on the nCounter® SPRINT
Watch this video to learn how to start your run on the nCounter SPRINT.
5 min
nCounter® SPRINT Profiler Instrument Operation Basic How-To Video
CosMx SMI RNA Assay Methods Template
PMR-11836-01 | Apr 2025
Manuals & Instructions White Papers and Tech Notes CosMx® Spatial Molecular Imager Sample Prep
GeoMx nCounter Readout User Manual
MAN-10089-11 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions GeoMx Readout: nCounter Document
GeoMx DSP Manual Slide Preparation User Manual
MAN-10150-07 | Sep 2025
GeoMx® Digital Spatial Profiler Manuals & Instructions Morphology Markers Sample Prep
CosMx SMI Manual Slide Preparation for Protein Assays
MAN-10185-06 | Apr 2026
Manuals & Instructions CosMx® Spatial Molecular Imager Sample Prep
How to Cite Grant Packages in Your Grant Application
PMR-11264-03 | Nov 2024
GeoMx® Digital Spatial Profiler nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX CosMx® Spatial Molecular Imager Author Guidelines
nCounter Pro Analysis System Enterprise Package
MK4658 | May 2022
nCounter® Pro/MAX/FLEX White Papers and Tech Notes Instrument Operation
nCounter Reference Genes for Normalization of Expression Data
TN-20090608
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes
Analyzing FFPE Specimens with the nCounter Copy Number Variation (CNV) Assay
TN_MK1113
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Copy Number Variation (CNV)
CellScape User Manual Archive
Previous versions of CellScape Sample Preparation and Instrument Operation User Manual
Manuals & Instructions Instrument Operation Document CellScape™ Platform
Quick Guide: GeoMx Manual Slide Preparation: RNA FFPE
MAN-10130-08 | Nov 2023
GeoMx® Digital Spatial Profiler Quick Reference Guide Document Sample Prep
Quick Guide: GeoMx Semi-Automated Slide Preparation: Protein FFPE
MAN-10139-06 | Nov 2023
GeoMx® Digital Spatial Profiler Leica BOND RX Quick Reference Guide Document Sample Prep
nCounter miRGE Assay User Manual
MAN-C0017-03 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions miRNA Sample Prep
nCounter MAX/FLEX Analysis System User Manual
MAN-C0035-10 | Dec 2024
nCounter® Pro/MAX/FLEX Manuals & Instructions Instrument Operation Document
CosMx SMI Best Practices: Tips for Prepping Highly Autofluorescent Samples
Volume 4 | June 2025
White Papers and Tech Notes Document CosMx® Spatial Molecular Imager Sample Prep
AtoMx SIP and CosMx SMI Data Analysis v2.2 Release Notes
PMR11369-10 | Jan 2026
Document CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform Release Notes / Software
Quick Guide: Downloading SPRINT Log Files
MK0673 | Mar 2018
nCounter® SPRINT Profiler Instrument Operation Troubleshoot Quick Reference Guide Document
GeoMx DSP Software Updates
GeoMx® Digital Spatial Profiler Instrument Operation Release Notes / Software
Configure and Install SSL Certificates for GeoMx DSP
MAN-10168-03 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation
Download and Transmit Log Files from GeoMx DSP
MK3840 | Mar 2023
GeoMx® Digital Spatial Profiler Instrument Operation Quick Reference Guide Guideline Document
GeoMx DSP Morphology Marker Reference List
Feb 2025
GeoMx® Digital Spatial Profiler White Papers and Tech Notes CRO/Core Lab Resources Guideline Morphology Markers Sample Prep
[separator] AtoMx® Overview Courses
Below are interactive courses to help you learn about the AtoMx® platform.
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CosMx SMI Hibernation Protocol (software v2.0 and earlier)
PMR-11819-03
Manuals & Instructions Instrument Operation CosMx® Spatial Molecular Imager
Best Practices for Region of Interest Segmentation
This intermediate level course is for GeoMx® DSP users that are familiar with region of interest (ROI) selection and want to learn how to perform segmentation.
26 min
GeoMx® Digital Spatial Profiler Instrument Operation Course Segmentation
nCounter® MAX/FLEX/Pro File Definitions
Watch this video to learn more about the files needed to run the nCounter® MAX/FLEX/Pro.
16 min
Data Analysis nCounter® Pro/MAX/FLEX Instrument Operation Basic Course
nCounter® SPRINT File Definitions
Watch this video to learn more about the files needed to run the nCounter SPRINT.
4 min
Data Analysis nCounter® SPRINT Profiler Instrument Operation Basic How-To Video
CosMx SMI Software v2.2 Release Notes
PMR-11700-09 | Jan 2026
Document CosMx® Spatial Molecular Imager Release Notes / Software
CosMx SMI RNA FFPE Assay Bench Notes
MAN-10180-04 | May 2025
Quick Reference Guide CosMx® Spatial Molecular Imager Sample Prep
Quick Guide: Loading a SPRINT Cartridge
nCounter® SPRINT Profiler Instrument Operation Quick Reference Guide Document Sample Prep
ROSALIND Knowledge Hub
Click here to visit the knowledge hub.
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Document
GeoMx DSP RNA Assay Methods Template
PMR-11918-01 | Dec 2025
GeoMx® Digital Spatial Profiler GeoMx Whole Transcriptome Atlas GeoMx® Cancer Transcriptome Atlas GeoMx Readout: NGS Document
Quick Guide: nSolver 4.0
MAN-10049-01
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Quick Reference Guide
Ultra-High-Plex Spatial Proteogenomics of FFPE Tissue Sections
MK4713 | May 2022
GeoMx® Digital Spatial Profiler Data Analysis White Papers and Tech Notes Instrument Operation GeoMx Readout: NGS Multiomics Sample Prep
Optimal Thaw/Freeze Cycle Analysis for nCounter Lung Gene Fusion Panel
MK0167
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Sample Prep Gene Fusion
GeoMx DSP Morphology Marker Datasheets
May 2022
GeoMx® Digital Spatial Profiler White Papers and Tech Notes CRO/Core Lab Resources Guideline Morphology Markers Sample Prep
Evaluating the Technical Performance of Single-Cell Spatial Molecular Imaging Technologies
MK5986 | Sept 2023
Data Analysis White Papers and Tech Notes Instrument Operation CosMx® Spatial Molecular Imager Sample Prep
CosMx® SMI: Networking Basics
This course is intended for IT professionals and will cover the requirements to network the CosMx® SMI instrument.
10 min
Instrument Operation Advanced CosMx® Spatial Molecular Imager Course
GeoMx® DSP 101: Introduction to the Technology
This course will introduce you to the GeoMx® Digital Spatial Profiler to provide you with a basic understanding of the technology.
11 min
GeoMx® Digital Spatial Profiler Instrument Operation Introductory Course
[separator] Region of Interest Selection
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Quick Guide: GeoMx Fully Automated Slide Preparation: RNA FFPE
MAN-10157-04 | Nov 2023
GeoMx® Digital Spatial Profiler Leica BOND RX Quick Reference Guide Sample Prep
How to Clean Your GeoMx DSP Slide Holder
MAN-10149-02 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation Guideline
GeoMx DSP Library and Sequencing Guide
PMR-11318-02 | Nov 2023
GeoMx® Digital Spatial Profiler GeoMx Readout: NGS CRO/Core Lab Resources Quick Reference Guide
Introduction to Region of Interest Selection
This introductory level course is for new GeoMx® DSP users that want to learn more about ROI selection.
30 min
GeoMx® Digital Spatial Profiler Instrument Operation Introductory Course Region of Interest
Nanostring PanCancer IO360 Panel Validation
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes CRO/Core Lab Resources
GeoMx DSP Spatial Multiomic Assay
MAN-10158-06 | Sep 2025
GeoMx® Digital Spatial Profiler Manuals & Instructions Guideline Multiomics Sample Prep
Protocol: Secondary Antibody Staining with the CellScape Platforms
PMR-11946-01 | Apr 2026
Document CellScape™ Platform Protocols CellScape™ XR Platform
GeoMx Digital Spatial Profiler (DSP) Project Design Guide
MK3312 | Aug 2021
GeoMx® Digital Spatial Profiler Data Analysis White Papers and Tech Notes Instrument Operation CRO/Core Lab Resources Site Readiness Guideline Sample Prep
nCounter Gene Expression Assay Methods Template
PMR-11876-01
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep
New Insights into Neuroscience Research
PM0024 | Nov 2017
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes
GeoMx DSP IHC Workflow and Custom Morphology Markers: Troubleshooting, Tips and Tricks
MAN-10172-02 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions CRO/Core Lab Resources Morphology Markers Sample Prep
GeoMx DSP User Manual Archive
Previous versions of instrument and workflow manuals
GeoMx® Digital Spatial Profiler Data Analysis Manuals & Instructions Instrument Operation GeoMx Readout: NGS Basic Advanced GeoMx Readout: nCounter Document Sample Prep
GeoMx DSP and Visiopharm Oncotopix Discovery Workflow Instructions
MAN-10177-02 | Oct 2024
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation Visiopharm
CosMx SMI RNA Fresh Frozen Assay Bench Notes
MAN-10182-04 | June 2025
Quick Reference Guide CosMx® Spatial Molecular Imager Sample Prep
GeoMx DSP TCR Profiling Plug-in Instructions
PMR-11555-02 | Nov 2024
GeoMx® Digital Spatial Profiler Data Analysis Manuals & Instructions
nCounter Neuropathology Application Note
MK0553
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes
nCounter Gene Signature Assays (PAM50, LST, TIS)
MAN-10188-02 | Apr 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep Gene Signature Assays (PAM50, LST, TIS)
High Throughput Spatial-Omics Sample Processing Using GeoMx DSP
MK3600 | June 2023
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Sample Prep
High-Throughput Automated NGS Library Preparation Workflow for GeoMx DSP
PMR-11765 | Jan 2025
GeoMx® Digital Spatial Profiler White Papers and Tech Notes GeoMx Readout: NGS CRO/Core Lab Resources Sample Prep
nCounter Analysis System Grant Application Package
MK2295
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX
nCounter Best Practices: How to Make a Synthetic Calibration Sample
MK4708
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX White Papers and Tech Notes Sample Prep Standards & Calibration Samples
Sign Up For Your In-Person Demo In The Customer Experience Lab!
Click here to claim your spot in the next demo hosted by the Customer Experience lab in Seattle or Amsterdam.
How to use the Spatial Decon Custom Script
Cell type deconvolution tool for GeoMx® DSP
6 min
GeoMx® Digital Spatial Profiler GeoMx Whole Transcriptome Atlas GeoMx® Cancer Transcriptome Atlas Data Analysis Instrument Operation GeoMx Readout: NGS Advanced How-To Video
Best Practices For The GeoMx® DSP
Check out this course to learn about the best practices for setting up a successful GeoMx DSP experiment.
20 min
GeoMx® Digital Spatial Profiler Introductory Basic Experimental Design
[separator] GeoMx DSP Workflow Overviews
separator
New Features of GeoMx® DSP Software v3.0 including Scan Only Mode
Check out the new and improved features of the GeoMx® DSP software!
GeoMx® Digital Spatial Profiler Instrument Operation Basic
GeoMx® DSP Configuration Files
Please select the configuration files, such as .PKC and .MKC, on this page that match the name and lot number of the GeoMx Assays used.
GeoMx® Digital Spatial Profiler Data Analysis Instrument Operation Basic
GeoMx® DSP: Data Analysis for RNA NGS Readout
This interactive course covers GeoMx® DSP data analysis for RNA-NGS readout.
1 hr 0 min
GeoMx® Digital Spatial Profiler Data Analysis GeoMx Readout: NGS Basic Course
GeoMx® DSP: How to Analyze Data from the TCR Profiling Add-on Assay
Watch this short video to see how to analyze your data using this add-on assay!
7 min
GeoMx® Digital Spatial Profiler Data Analysis Basic How-To Video
Advanced Segmentation Using ImageJ
This advanced level course is for GeoMx® DSP users that are familiar with region of interest (ROI) segmentation and want to learn how to use ImageJ to customize segmentation masks.
25 min
GeoMx® Digital Spatial Profiler Instrument Operation Advanced Region of Interest Selection
How to connect to GeoMx Support using LogMeIn Rescue
This tutorial shows how to establish a connection with NanoString's GeoMx Support team using the secure LogMeIn application.
3 min
GeoMx® Digital Spatial Profiler Instrument Operation Basic How-To Video
How To Use Morphology Markers with the GeoMx® DSP
This course will cover how to select and optimize your morphology markers before running experiments on the GeoMx® DSP.
20 min
GeoMx® Digital Spatial Profiler Basic Morphology Markers Course Experimental Design Sample Prep
Quick Guide: GeoMx Manual Slide Preparation: Protein FFPE
MAN-10138-06 | Nov 2023
GeoMx® Digital Spatial Profiler Quick Reference Guide Document Sample Prep
Quick Guide: GeoMx DSP - nCounter Data Analysis
MAN-10105-04 | Nov 2023
GeoMx® Digital Spatial Profiler Data Analysis Quick Reference Guide
Methods to Verify GeoMx DSP Morphology Markers
PMR-11593-01 | Sept 2023
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Morphology Markers Sample Prep
Stop by our Customer Experience Lab in Seattle!
We welcome you to come check out the equipment and to meet our wonderful team.
ROSALIND® nCounter Gene Expression Masterclass
Lean more about data analysis, best practices, see example datasets, and learn advanced nCounter functionality!
Data Analysis Basic Tile URL ROSALIND®
GeoMx DSP Cybersecurity Guidelines
MAN-10099-03
GeoMx® Digital Spatial Profiler Instrument Operation Site Readiness Guideline Document
New Fall 2025: CosMx® SMI Tray Lids Announcement
We’re introducing CosMx SMI reagent trays with protective lids and thicker foil for improved shipping durability
1 min
Demo Instrument Operation CosMx® Spatial Molecular Imager Course Consumables
nCounter Pro Analysis System Cybersecurity FAQ
PMR-11227-05 | Nov 2024
nCounter® Pro/MAX/FLEX Instrument Operation
Gene Expression Panels and Custom CodeSet User Manual
MAN-10056-08 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions nCounter CodeSet Document Sample Prep
Quick Guide: GeoMx DSP Instrument
MAN-10132-05 | Nov 2023
GeoMx® Digital Spatial Profiler Instrument Operation Quick Reference Guide
nCounter Advanced Analysis Installation Instructions
MAN-10193-02 | Dec 2024
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions
GeoMx DSP Software Release Notes Archive
Previous versions of software release notes
GeoMx® Digital Spatial Profiler Instrument Operation GeoMx Readout: NGS Release Notes / Software
Protocol: CellScape XR Customer Training Kit
PMR-11947-01 | Jun 2026
Instrument Operation Introductory Protocols VistaPlex Kits CellScape™ XR Platform
GeoMx NGS Pipeline Software User Manual
MAN-10118-03 | This document has been replaced by the GeoMx NGS Readout User Manual (MAN-10153).
Not currently available
GeoMx® Digital Spatial Profiler Manuals & Instructions GeoMx Readout: NGS Document
CellScape Navigator Release Notes Archive
Previous versions of software release notes
Release Notes / Software CellScape™ Platform
All About Fusion Analysis in nSolver & Advanced Analysis
MAN-10076-01
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Quick Reference Guide Gene Fusion
Sample Sectioning Tips and Tricks for CosMx SMI and GeoMx DSP Experiments
MAN-10175-02 | Oct 2024
GeoMx® Digital Spatial Profiler White Papers and Tech Notes CosMx® Spatial Molecular Imager Sample Prep
GeoMx DSP: Creating Geometric Segmentation Masks using ImageJ: Custom Shapes
MK2645-3 | July 2020
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation Guideline Document ImageJ
CellScape XR Sample Preparation and Instrument Operation
MAN-10210-01 | Jun 2026
Manuals & Instructions Instrument Operation Document Sample Prep CellScape™ XR Platform
Materials List: GeoMx Protein (Semi-Automated) with nCounter Readout
MAN-10127-09 | Oct 2024
GeoMx® Digital Spatial Profiler Leica BOND RX Site Readiness Checklist
nCounter Data Analysis Guidelines for Copy Number Variation (CNV)
MAN-C0014-02
Data Analysis nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Copy Number Variation (CNV)
GeoMx Custom RNA Assays for NGS Readout: Guideline for Use as a Standalone Assay
SEV-00181-01 | This document has been retired. Find the guidance to run standalone custom RNA assays incorporated to the GeoMx DSP Slide Preparation, Instrument, and NGS Readout User Manuals (April 2022).
Not currently available
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation GeoMx Readout: NGS Guideline Document Sample Prep
CosMx SMI & AtoMx SIP User Manual Archive
Previous versions of user manuals
Data Analysis Manuals & Instructions Instrument Operation Site Readiness CosMx® Spatial Molecular Imager AtoMx® Spatial Informatics Platform Sample Prep
GeoMx DSP Automated Slide Preparation User Manual
MAN-10151-07 | Sep 2025
GeoMx® Digital Spatial Profiler Manuals & Instructions Leica BOND RX Morphology Markers Sample Prep
Best Practices for Breast Cancer BC360 Gene Expression Panel
LBL-10544-02
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions White Papers and Tech Notes CRO/Core Lab Resources Sample Prep
Molecularly Guided Highly Multiplexed Spatial Profiling with the RNAscope and GeoMx Assays
MK1413 | Aug 2019
GeoMx® Digital Spatial Profiler White Papers and Tech Notes RNAscope Document Sample Prep
CosMx SMI Site Preparation Guide
MAN-10171-08 | Feb 2026
Manuals & Instructions Site Readiness CosMx® Spatial Molecular Imager
nCounter Analysis System (MAX/FLEX or Pro) Site Requirements Checklist
FRM-M0265-06 | Nov 2025
nCounter® Pro/MAX/FLEX Site Readiness Checklist
Evaluating the Technical Performance of Single-Cell Spatial Molecular Imaging Technologies
MK5986 | Sep 2023
Data Analysis White Papers and Tech Notes Document CosMx® Spatial Molecular Imager
Multi-step Antibody Validation for the GeoMx Digital Spatial Profiler
MK2598 | July 2020
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Document Sample Prep
GeoMx DSP Software Release History
PMR-11503-05 | Nov 2025
GeoMx® Digital Spatial Profiler Instrument Operation Release Notes / Software
How to Send MAX/FLEX Log Files
MK0673
nCounter® Pro/MAX/FLEX Instrument Operation Quick Reference Guide
CosMx SMI Best Practices: Tip for Multiomics Assays on Fragile Tissues
Volume 5 | October 2025
White Papers and Tech Notes CosMx® Spatial Molecular Imager Sample Prep
GeoMx DSP Data Analysis Auxiliary Server - Tech Specs and User Guidelines
PMR-11229-04 | Nov 2024
GeoMx® Digital Spatial Profiler Data Analysis Manuals & Instructions White Papers and Tech Notes Instrument Operation Basic Guideline
Best Practices for Spatial Profiling for Breast Cancer Research with the GeoMx® Digital Spatial Profiler
Bergholtz H, et al. 2021
GeoMx® Digital Spatial Profiler CRO/Core Lab Resources Document
Preparing Cell Lysates for nCounter Assays (Lyse and Go Protocol)
MAN-10051-07 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep
Spatial Profiling of COVID-19 Samples: Experimental Designs to Capture Regional Heterogeneity with the GeoMx DSP
MK2794 | Sept 2020
GeoMx® Digital Spatial Profiler White Papers and Tech Notes COVID-19 Document
CosMx Spatial Molecular Imager (SMI) Specifications
MK5020 | May 2025
Instrument Operation Site Readiness Document CosMx® Spatial Molecular Imager
PlexSet Reagents User Manual
MAN-10040-09 | Dec 2024
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions PlexSet Document Sample Prep
GeoMx DSP: Creating Geometric Segmentation Masks using ImageJ: Contouring
MK2645-2 | Mar 2023
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation Guideline Document ImageJ
nCounter® 101: Introduction to the Technology
This course will introduce you to the nCounter® Analysis System to provide you with a basic understanding of the technology.
21 min
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Instrument Operation Introductory Course nCounter Analysis System Sample Prep
GeoMx DSP Operation Guide for Service Providers
MK2689 | Aug 2020
GeoMx® Digital Spatial Profiler White Papers and Tech Notes CRO/Core Lab Resources Document auto-registration
Site Readiness: CosMx® SMI RNA Manual Workflow
Congratulations on your new CosMx® SMI purchase! To ensure you're fully prepared for your upcoming training, please visit our learning path to get your site ready.
6 Courses
New Features of the CellScape™ Navigator Software v1.1.2
A short demo of the three key improvements and new features of this software release. Click here to check it out!
2 min
Instrument Operation Basic Release Notes / Software CellScape™ Platform
GeoMx DSP Data Analysis Resource Guide
PMR-11294-04 | Nov 2024
GeoMx® Digital Spatial Profiler Data Analysis CRO/Core Lab Resources Quick Reference Guide
nCounter® Training Path: nCounter MAX/FLEX/Pro
Training on nCounter® assays and the MAX/FLEX/Pro Analysis Systems
4 Courses
nCounter® Pro/MAX/FLEX Instrument Operation Basic Course Sample Prep
nCounter® Training Path: nCounter SPRINT
Training on nCounter® assays and the SPRINT Analysis System
3 Courses
Instrument Operation Basic Course Sample Prep
Introduction to the GeoMx Digital Spatial Profiler: Morphology-Driven Spatial Genomics and Proteomics
Wes Goldman, Senior Technical Sales Specialist
30 min
GeoMx® Digital Spatial Profiler GeoMx Whole Transcriptome Atlas GeoMx® Cancer Transcriptome Atlas Introductory Course
CX Lab Experience: An Overview of the GeoMx DSP Workflow
Highlights of the GeoMx workflow with NGS Readout, from the NanoString Customer Experience Lab in Seattle
16 min
GeoMx® Digital Spatial Profiler Demo Data Analysis Instrument Operation Introductory Sample Prep
CellScape Precise Spatial Proteomics Methods Template
PMR-11919-01 | Dec 2025
Document CellScape™ Platform Author Guidelines
Protocols: VistaPlex Assay Kits for Fresh Frozen Samples
PMR-11935-01 | Mar 2026
CellScape™ Platform Protocols VistaPlex Kits
Protocols: VistaPlex Assay Kits for FFPE Samples
PMR-11936-01 | Mar 2026
CellScape™ Platform Protocols VistaPlex Kits
CellScape Navigator Software v1.1.4 Release Notes
PMR-11916-01 | Nov 2025
Document Release Notes / Software CellScape™ Platform
How to Assemble a CellScape™ Whole Slide Imaging Chamber
Looking for a visual walkthrough of how to turn your prepared tissue slide into an imaging chamber ready to move to the CellScape™ instrument? Watch a short demo here!
4 min
Basic Course How-To Video Sample Prep CellScape™ Platform
William L. Hwang, MD, PhD: Precision Oncology in Pancreatic Cancer through Single-Cell and Spatial Omics
See how the GeoMx® DSP was used to study pancreatic ductal adenocarcinoma.
GeoMx® Digital Spatial Profiler Webinar Advanced
GeoMx DSP Best Practices and Troubleshooting
Excerpt from GeoMx DSP Instrument User Manual
GeoMx® Digital Spatial Profiler Manuals & Instructions Instrument Operation Troubleshoot
Pharma and CRO Spatial Summit Series
Learn how 6 of our Pharma and Contract Research Organizations (CROs) customers are designing and executing GeoMx® DSP experiments for clinical studies.
153 min
GeoMx® Digital Spatial Profiler Webinar Basic
nCounter® MAX/FLEX/Pro CodeSet Hybridization Setup
Check out this video to see how to setup the CodeSet hybridization for your nCounter® MAX/FLEX/Pro run.
6 min
nCounter® Pro/MAX/FLEX nCounter CodeSet Basic How-To Video Sample Prep
Setting Up the nCounter® MAX/FLEX/Pro Prep Station
Check out this video to see how to setup the nCounter MAX/FLEX/Pro Prep Station.
13 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic How-To Video
Setting Up the nCounter® MAX/FLEX/Pro Digital Analyzer
Check out this video to see how to run the nCounter® MAX/FLEX/Pro Digital Analyzer.
6 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic How-To Video
Master Kit Consumables
Watch this video to see what is included in the nCounter® MAX/FLEX/Pro Master Kit!
3 min
nCounter® Pro/MAX/FLEX Instrument Operation Basic How-To Video
New Features of GeoMx Software v2.5 including Data Analysis Workflows
Check out the new & improved features of the GeoMx DSP software!
7 min
GeoMx® Digital Spatial Profiler Data Analysis Instrument Operation GeoMx Readout: NGS Basic How-To Video
[separator] Data Analysis Overview Courses
Below are interactive courses to help you understand GeoMx® DSP data analysis.
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[separator] How-to Videos
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[separator] Sample Preparation Courses
Below are interactive courses to help get you started with GeoMx® DSP sample preparation.
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[separator] Basic Overview Courses
Below are interactive courses designed to provide a basic understanding of the GeoMx® DSP system.
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[separator] Resources
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[separator] GeoMx® DSP Overview Courses
Below are interactive courses to help you understand how the GeoMx® DSP system works.
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nCounter RUO PAM50 CodeSet User Manual (MAN-10125)
This document has been retired. Please refer to the nCounter Gene Signature Assays User Manual (MAN-10188).
Not currently available
nCounter® SPRINT Profiler nCounter® Pro/MAX/FLEX Manuals & Instructions Sample Prep Gene Signature Assays (PAM50, LST, TIS)
GeoMx DSP IT Specifications and Requirements - In Depth
MK3838 | Oct 2023
GeoMx® Digital Spatial Profiler White Papers and Tech Notes Site Readiness
GeoMx NGS Pipeline on Illumina DRAGEN User Manual
RPP-00535-02 | This document has been replaced by the GeoMx NGS Readout User Manual (MAN-10153).
Not currently available
GeoMx® Digital Spatial Profiler Manuals & Instructions GeoMx Readout: NGS Document
Step 3: Required Equipment, Materials, and Reagents for the Semi-Automated RNA-NGS Workflow
Leica BOND RX RNA
Step 4: NanoString GeoMx® DSP Training Kit for the Semi-Automated RNA-NGS Workflow
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 5: Pre-Training Preparation for the Semi-Automated RNA-NGS Workflow
Step 2: IT Requirements and Specifications
Step 6: Training Coursework for the Semi-Automated RNA-NGS Workflow
Getting Started with nCounter Data Analysis
In this course, we describe the different platforms available for nCounter data analysis and how to get started with each one.
8 min
Getting Ready to Run Your First Samples
Learn about nCounter sample preparation, the materials and reagents you'll use for your nCounter run, nCounter file definitions, and adjusting for batch effects as you prepare to run your first samples.
46 min
Step 6: Training Coursework for the Fully Automated RNA-NGS Workflow
Step 3: Required Equipment, Materials, and Reagents for the Fully Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP Training Kit for the Fully Automated RNA-NGS Workflow
Step 5: Pre-Training Preparation for the Fully Automated RNA-NGS Workflow
Site Readiness: Fully Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: NanoString GeoMx® DSP RNA-NGS Training Kit
Step 5: Pre-Training Preparation
Step 3: Required Equipment, Materials, and Reagents for the RNA-NGS Manual Workflow
Step 6: Training Coursework
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: CosMx® SMI Pre-Training Preparation
This step discusses the instructions for pre-training preparation to ensure everything is setup prior to your training.
Step 5: CosMx® SMI Training Coursework
This section includes the coursework you will need to complete before your training.
Step 1: CosMx® SMI Site Preparation Guide
Start here to review the Site Preparation Guide to prepare your lab space for your training.
Site Readiness: CosMx® SMI RNA-Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 2: Required Equipment, Materials, and Reagents
This section covers the required equipment, materials, and reagents for your training.
Step 3: NanoString CosMx® SMI Training Kit
This step goes over what is included in the NanoString CosMx® SMI Training Kit.
Step 3: Required Equipment, Materials, and Reagents for the Semi-Automated RNA-NGS Workflow
Leica BOND RX RNA
Step 4: NanoString GeoMx® DSP Training Kit for the Semi-Automated RNA-NGS Workflow
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 5: Pre-Training Preparation for the Semi-Automated RNA-NGS Workflow
Step 2: IT Requirements and Specifications
Step 6: Training Coursework for the Semi-Automated RNA-NGS Workflow
Getting Started with nCounter Data Analysis
In this course, we describe the different platforms available for nCounter data analysis and how to get started with each one.
8 min
Getting Ready to Run Your First Samples
Learn about nCounter sample preparation, the materials and reagents you'll use for your nCounter run, nCounter file definitions, and adjusting for batch effects as you prepare to run your first samples.
46 min
Step 6: Training Coursework for the Fully Automated RNA-NGS Workflow
Step 3: Required Equipment, Materials, and Reagents for the Fully Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP Training Kit for the Fully Automated RNA-NGS Workflow
Step 5: Pre-Training Preparation for the Fully Automated RNA-NGS Workflow
Site Readiness: Fully Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: NanoString GeoMx® DSP RNA-NGS Training Kit
Step 5: Pre-Training Preparation
Step 3: Required Equipment, Materials, and Reagents for the RNA-NGS Manual Workflow
Step 6: Training Coursework
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: CosMx® SMI Pre-Training Preparation
This step discusses the instructions for pre-training preparation to ensure everything is setup prior to your training.
Step 5: CosMx® SMI Training Coursework
This section includes the coursework you will need to complete before your training.
Step 1: CosMx® SMI Site Preparation Guide
Start here to review the Site Preparation Guide to prepare your lab space for your training.
Site Readiness: CosMx® SMI RNA-Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 2: Required Equipment, Materials, and Reagents
This section covers the required equipment, materials, and reagents for your training.
Step 3: NanoString CosMx® SMI Training Kit
This step goes over what is included in the NanoString CosMx® SMI Training Kit.