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  • Install
    • Installation from Source
      • Windows
    • Update
    • Dependencies
  • Tutorials and How-To Guides
    • Tutorial 1: Basic Reconstructions
      • Preamble: Prepare Test Images
      • Perform a Single Slice Reconstruction
      • Perform a Full Volume Reconstruction
      • Modify Reconstruction Behavior
  • Usage
    • Reconstruction
    • Reconstruction Parameters
      • Command Line Arguments
      • YAML Parameter File
      • Global Configuration File
    • Output Folder
    • Find Center
    • Stripe Removal
    • Help
  • Testing
  • API reference
    • tomopy_cli.file_io
      • auto_read_dxchange()
      • binning()
      • blocked_view()
      • check_item_exists_hdf()
      • convert()
      • file_base_name()
      • flip_and_stitch()
      • get_dx_dims()
      • patch_projection()
      • path_base_name()
      • read_bright_ratio()
      • read_filter_materials()
      • read_filter_materials_tomoscan()
      • read_pixel_size()
      • read_rot_center()
      • read_scintillator()
      • read_tomo()
      • write_hdf5()
      • yaml_file_list()
    • tomopy_cli.find_center
      • find_rotation_axis()
    • tomopy_cli.flat_drift_correction
      • apply_shift()
      • chunk()
      • find_min_max()
      • flat_drift_correction()
      • register_shift_sift()
    • tomopy_cli.post
      • segment()
    • tomopy_cli.prep
      • all()
      • beamhardening_correct()
      • cap_sinogram_values()
      • flat_correction()
      • minus_log()
      • phase_retrieval()
      • remove_nan_neg_inf()
      • remove_stripe()
      • zinger_removal()
    • tomopy_cli.recon
      • double_fov()
      • double_fov_try()
      • mask()
      • padded_rec()
      • padding()
      • rec()
      • reconstruct()
      • reconstruction_folder()
      • unpadding()
    • tomopy_cli.util
      • guess_center()
      • positive_int()
      • range_list()
      • restricted_float()
      • theta_step()
      • update_dict()
  • Credits
    • Citations
    • References
tomopy-cli
  • tomopy-cli
  • Edit on GitHub

tomopy-cli¶

project

tomopy-cli is commad-line-interface for TomoPy an open-source Python package for tomographic data processing and image reconstruction.

Features¶

  • List here

  • the module features

Contribute¶

  • Documentation: https://github.com/tomography/tomopy-cli/tree/master/doc

  • Issue Tracker: https://github.com/tomography/tomopy-cli/docs/issues

  • Source Code: https://github.com/tomography/tomopy-cli/

Content¶

  • Install
    • Installation from Source
    • Update
    • Dependencies
  • Tutorials and How-To Guides
    • Tutorial 1: Basic Reconstructions
  • Usage
    • Reconstruction
    • Reconstruction Parameters
    • Output Folder
    • Find Center
    • Stripe Removal
    • Help
  • Testing
  • API reference
    • tomopy_cli.file_io
    • tomopy_cli.find_center
    • tomopy_cli.flat_drift_correction
    • tomopy_cli.post
    • tomopy_cli.prep
    • tomopy_cli.recon
    • tomopy_cli.util
  • Credits
    • Citations
    • References
Next

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