Showing : enrichplot • reset
0
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1.2k
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Error in cnetplot
enrichplot clusterProfiler
updated 12 months ago by ★ 4.1k • written 12 months ago by • 0
8
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6
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13k
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Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 22 months ago by ▴ 30 • written 6.9 years ago by ▴ 180
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2
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3.7k
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 7 months ago by • 0 • written 24 months ago by • 0
2
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2
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2.1k
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
2.1 years ago Eva ▴ 30
2
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6
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7.0k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
2.2 years ago • updated 2.1 years ago Tobias • 0
0
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1
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1.2k
views
visualizing GSEA showCategory question
enrichplot
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
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2
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1.7k
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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0
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782
views
HeatPlot - Genes selections
enrichplot stringr heatplot
2.6 years ago ruba-mahmoud • 0
0
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3
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3.9k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 2.5 years ago by • 0 • written 2.7 years ago by • 0
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5
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2.7k
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plot enrichment results
enrichplot clusterProfiler
updated 2.8 years ago by ▴ 760 • written 2.8 years ago by • 0
2
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4
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3.8k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
2.9 years ago Tyroone • 0
0
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1
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2.2k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by • 0
0
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1
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1.1k
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
0
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5
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4.3k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 2.6 years ago by • 0 • written 3.3 years ago by • 0
2
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3
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4.3k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.5 years ago by ▴ 150 • written 3.5 years ago by ▴ 10
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1
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3.0k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 3.5 years ago by ★ 1.2k • written 3.5 years ago by • 0
3
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5
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5.7k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 3.6 years ago by ★ 1.2k • written 3.9 years ago by ▴ 40
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3
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7.5k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 3.7 years ago by ★ 4.1k • written 3.8 years ago by ▴ 10
1
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1
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2.1k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.8 years ago by ★ 4.1k • written 3.8 years ago by ▴ 30
1
vote
3
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13k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 4.0 years ago by ★ 3.4k • written 4.0 years ago by • 0
0
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1
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1.8k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 4.0 years ago by • 0 • written 4.1 years ago by ▴ 10
5
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13
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7.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 4.1 years ago by ▴ 50 • written 4.1 years ago by • 0
2
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1
reply
2.5k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
4.3 years ago fatimaruizdelabastida ▴ 10
0
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1
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2.5k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 10
0
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2
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2.2k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.5 years ago Adarsh • 0
2
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4
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4.7k
views
enrichDGN result can't be visualised by barplot
enrichplot
4.5 years ago Pahi ▴ 10
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0
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2.0k
views
EnrichGO
R enrichplot
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
1
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4
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8.1k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 4.0 years ago by • 0 • written 4.7 years ago by • 0
2
votes
6
replies
10k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
5.3 years ago • updated 5.2 years ago Emilia ▴ 40
0
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1
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2.1k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 5.2 years ago by ▴ 40 • written 5.3 years ago by • 0
2
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1
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1.1k
views
Parsing geoms to enrichplot
enrichplot
5.7 years ago Francois Marchildon ▴ 20
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0
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1.6k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.9 years ago jan.soderman • 0
0
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1
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3.2k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 6.2 years ago by ★ 4.1k • written 6.2 years ago by • 0
2
votes
5
replies
4.0k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 6.2 years ago by ▴ 30
0
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0
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1.8k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
7.1 years ago yurigorelik ▴ 10
0
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0
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2.4k
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Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
7.8 years ago jan.soderman • 0
36 results • Page 1 of 1
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Comment: day-of-hybridisation variability by atlnuilix • 0
For experiments involving Affymetrix chips, variability due to the day of hybridization can indeed affect results, especially when replicat…
Comment: DESeq2 + analysis question for design with uneven time point design by atlnuilix • 0
It models the main effects of time, treatment, and their interaction, helping identify genes whose expression changes specifically due to t…
Comment: Bulk RNAseq analysis for by atlnuilix • 0
For your bulk RNA-seq design, it is better not to treat all 15 samples as fully independent because the three differentiations within each …
Answer: Diffbind using EdgeR by Gordon Smyth 53k
I'm guessing that the error has probably arisen from a call to edgeR::glmLRT() within DiffBind, which in turn calls limma::contrastAsCoef()…
Comment: Are DESeq2 significant results with 2 replicates per group, less than significan by ronniemkellogg • 0
This is an important discussion about statistical reliability in RNA-seq analysis [Escape Tsunami for Brainrots](https://escapetsunamiforbr…
Votes
Answer: Blocking vs duplicateCorrelation for unbalanced designs in limma
Answer: Diffbind using EdgeR
Comment: DESeq2 single factor multiple levels, log of ratio or ratio of log ?
Comment: Oligo RMA normalization : ERROR; return code from pthread_create() is 22
Answer: Blocking vs duplicateCorrelation for unbalanced designs in limma
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