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Python-ModelCIF documentation¶

This is a Python package to assist in handling mmCIF files compliant with the ModelCIF extension.

The documentation below documents the library API. For complete worked examples, see the examples directory at GitHub.

Contents¶

  • Introduction
  • Usage
    • System architecture
    • Modeling protocol
    • Model coordinates
    • Metadata
    • Residue numbering
    • Output
    • Input
    • Format conversion
    • Validation
  • Limitations
  • Change history
    • 1.6 - 2025-12-12
    • 1.5 - 2025-09-17
    • 1.4 - 2025-06-11
    • 1.3 - 2025-01-14
    • 1.2 - 2024-10-23
    • 1.1 - 2024-09-27
    • 1.0 - 2024-06-20
    • 0.9 - 2023-10-02
    • 0.8 - 2023-08-04
    • 0.7 - 2023-01-25
    • 0.6 - 2022-08-03
    • 0.5 - 2022-05-10
    • 0.4 - 2022-04-14
    • 0.3 - 2022-03-21
    • 0.2 - 2022-01-27
    • 0.1 - 2022-01-26

API Reference:

  • The modelcif Python module
  • The modelcif.reference Python module
  • The modelcif.alignment Python module
  • The modelcif.data Python module
  • The modelcif.protocol Python module
  • The modelcif.model Python module
  • The modelcif.qa_metric Python module
  • The modelcif.associated Python module
  • The modelcif.descriptor Python module
  • The modelcif.dumper Python module
  • The modelcif.reader Python module

Indices and tables¶

  • Index

  • Module Index

  • Search Page

Table of Contents

  • Python-ModelCIF documentation
  • Contents
  • Indices and tables

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