{"id":15984,"date":"2021-11-02T07:37:51","date_gmt":"2021-11-02T07:37:51","guid":{"rendered":"https:\/\/www.staging46.machinelearningplus.com\/?p=15984"},"modified":"2023-08-27T02:59:59","modified_gmt":"2023-08-27T02:59:59","slug":"partial-correlation","status":"publish","type":"post","link":"https:\/\/machinelearningplus.com\/statistics\/partial-correlation\/","title":{"rendered":"Partial Correlation"},"content":{"rendered":"\r\n<h2 class=\"wp-block-heading\">What is Partial Correlation and it&#8217;s purpose<\/h2>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">Partial correlation is used to find the correlation between two variables (typically a dependent and an independent variable) with the effect of other influencing variables being controlled.<\/p>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">For example, if there are three variables &#8216;A&#8217;, &#8216;B&#8217;, &#8216;Z&#8217;, If you want to find the relationship between &#8216;A&#8217; and &#8216;B&#8217; with the influence of &#8216;Z&#8217; being controlled you can use partial correlation.<\/p>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">It is useful in several situations in real world, and can enrich your EDA results with more valuable insights.<\/p>\r\n\r\n\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\"><span style=\"text-decoration: underline;\"><strong>Related<\/strong>:<\/span> Complete <a href=\"https:\/\/edu.machinelearningplus.com\/s\/store\/courses\/description\/data-pre-processing-and-eda\"><span style=\"text-decoration: underline;\">Data Preprocessing and EDA course<\/span><\/a> by Selva (Principal Data Scientist)<\/p>\r\n\r\n\r\n\r\n<h2 class=\"wp-block-heading\">Difference between Simple Correlation and Partial Correlation<\/h2>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">Simple correlation (a.k.a. Pearson correlation coefficient) may not give a complete picture while trying to understand the relationship between two variables (A and B) especially when there exist other influencing variables that affect A (and\/or) B.<\/p>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">In fact, simple correlation mainly focuses on finding the influence of each variable on the other.<\/p>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">Whereas partial_correlation is used to find the refined relationship between two variables with the effect of the other influencing variables being excluded\/controlled.<\/p>\r\n\r\n\r\n\r\n<p class=\"wp-block-paragraph\">Let&#8217;s look at some examples where you can use Partial correlation.<\/p>\r\n\r\n\r\n<!-- \/wp:post-content -->\r\n\r\n<!-- wp:paragraph -->\r\n\r\n<!-- wp:heading -->\r\n<h2>Example of Partial Correlation in real world<\/h2>\r\n<!-- \/wp:heading -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>1) <strong>Education<\/strong>: If you have three variables <strong>study hours<\/strong>, <strong>marks obtained<\/strong>, <strong>classes attended,<\/strong> and want to find the correlation between the <strong>classes attended<\/strong> and <strong>marks obtained<\/strong> by controlling the effects of <strong>study hours<\/strong>. \r\n\r\nPartial correlation will be relevant here because &#8216;study hours&#8217; might be dependent on the classes attended (and marks) as well and you might want to see the pure relationship between these two, excluding the effect of study hours.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>2) <strong>Weather Detection<\/strong>: If you have three variables <strong>aerosol particles<\/strong> and <strong>abundance of cloud<\/strong> and <strong>wind speed<\/strong>. \r\n\r\nYou can use partial correlation to find the relationship between the <strong>amount of aerosol<\/strong> and the <strong>abundance of clouds<\/strong>.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>3) <strong>Weight Detection<\/strong>: The variables can be <strong>quantity of food<\/strong>, <strong>weight increase<\/strong>, <strong>calories<\/strong>. \r\n\r\nThis technique can be used to find the relationship between the <strong>quantity of food<\/strong>, <strong>weight increase,<\/strong> and the variable being controlled is <strong>calories<\/strong>.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:heading -->\r\n<h2 id=\"formula-for-partial-correlation\">Formula for Partial Correlation<\/h2>\r\n<!-- \/wp:heading -->\r\n\r\n<!-- wp:image {\"id\":16240,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img fetchpriority=\"high\" decoding=\"async\" width=\"997\" height=\"350\" class=\"wp-image-16240\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/11\/formula3.png\" alt=\"\" srcset=\"https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/11\/formula3.png 997w, https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/11\/formula3-300x105.png 300w, https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/11\/formula3-768x270.png 768w\" sizes=\"(max-width: 997px) 100vw, 997px\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>&nbsp;<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:heading -->\r\n<h2 id=\"creating-the-dataset-and-visualization\">Creating the dataset and visualization<\/h2>\r\n<!-- \/wp:heading -->\r\n\r\n<!-- wp:code -->\r\n<pre class=\"wp-block-code\"><code># Create a sample dataset\r\n<span class=\"hljs-keyword\">import<\/span> pandas <span class=\"hljs-keyword\">as<\/span> pd\r\n<span class=\"hljs-keyword\">import<\/span> matplotlib.pyplot <span class=\"hljs-keyword\">as<\/span> plt\r\n<span class=\"hljs-keyword\">import<\/span> math\r\nData = {<span class=\"hljs-string\">'A'<\/span> : [<span class=\"hljs-number\">4<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">1<\/span>, <span class=\"hljs-number\">8<\/span>, <span class=\"hljs-number\">6<\/span>, <span class=\"hljs-number\">9<\/span>, <span class=\"hljs-number\">8<\/span>, <span class=\"hljs-number\">11<\/span>, <span class=\"hljs-number\">13<\/span>, <span class=\"hljs-number\">12<\/span>, <span class=\"hljs-number\">14<\/span>],\r\n        <span class=\"hljs-string\">'B'<\/span> : [<span class=\"hljs-number\">1<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">4<\/span>, <span class=\"hljs-number\">9<\/span>, <span class=\"hljs-number\">8<\/span>, <span class=\"hljs-number\">9<\/span>, <span class=\"hljs-number\">6<\/span>, <span class=\"hljs-number\">14<\/span>, <span class=\"hljs-number\">12<\/span>, <span class=\"hljs-number\">13<\/span>, <span class=\"hljs-number\">12<\/span>],\r\n        <span class=\"hljs-string\">'Z'<\/span> : [<span class=\"hljs-number\">1<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">3<\/span>, <span class=\"hljs-number\">4<\/span>, <span class=\"hljs-number\">1<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">3<\/span>, <span class=\"hljs-number\">4<\/span>, <span class=\"hljs-number\">1<\/span>, <span class=\"hljs-number\">2<\/span>, <span class=\"hljs-number\">3<\/span>, <span class=\"hljs-number\">4<\/span>]}        \r\ndf = pd.DataFrame(Data, columns = [<span class=\"hljs-string\">'A'<\/span>, <span class=\"hljs-string\">'B'<\/span>, <span class=\"hljs-string\">'Z'<\/span>]) \r\ndf\r\n<\/code><\/pre>\r\n<!-- \/wp:code -->\r\n\r\n<!-- wp:image {\"id\":15986,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"112\" height=\"342\" class=\"wp-image-15986\" title=\"dataset\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/10\/x1.jpg\" alt=\"dataset\" srcset=\"https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/10\/x1.jpg 112w, https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/10\/x1-98x300.jpg 98w\" sizes=\"(max-width: 112px) 100vw, 112px\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>Let&#8217;s create a scatterplot of the variables &#8216;A&#8217; and &#8216;B&#8217;<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:code -->\r\n<pre class=\"wp-block-code\"><code># Scatterplot to understand the relationship\r\n<span class=\"hljs-selector-tag\">plt.plot<\/span>(df[<span class=\"hljs-string\">\"A\"<\/span>],df[<span class=\"hljs-string\">\"B\"<\/span>],<span class=\"hljs-string\">'ro'<\/span>)\r\n<span class=\"hljs-selector-tag\">plt.xlabel<\/span>(<span class=\"hljs-string\">\"A\"<\/span>)\r\n<span class=\"hljs-selector-tag\">plt.ylabel<\/span>(<span class=\"hljs-string\">\"B\"<\/span>)\r\n<\/code><\/pre>\r\n<!-- \/wp:code -->\r\n\r\n<!-- wp:image {\"id\":15987,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"382\" height=\"262\" class=\"wp-image-15987\" title=\"Partial Correlation\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/10\/output_13_1.png\" alt=\"Partial Correlation\" srcset=\"https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/10\/output_13_1.png 382w, https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/10\/output_13_1-300x206.png 300w\" sizes=\"(max-width: 382px) 100vw, 382px\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>Clearly, as &#8216;A&#8217; increases, &#8216;B&#8217; also increases.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>Let&#8217;s calculate the Pearson correlation first before calculating Partial correlation.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:preformatted -->\r\n<pre class=\"wp-block-preformatted\"># Calculate pearson correlation\r\ndf.corr()\r\n<\/pre>\r\n<!-- \/wp:preformatted -->\r\n\r\n<!-- wp:image {\"id\":16139,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"325\" height=\"155\" class=\"wp-image-16139\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/11\/correlation-matrix.png\" alt=\"correlation matrix\" srcset=\"https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/11\/correlation-matrix.png 325w, https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/11\/correlation-matrix-300x143.png 300w\" sizes=\"(max-width: 325px) 100vw, 325px\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:heading -->\r\n<h2 id=\"calculation\">Partial Correlation Calculation<\/h2>\r\n<!-- \/wp:heading -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>The <code>pingouin<\/code> has a function called <code>.partial_corr<\/code> to calculate the partial_correlation.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:code -->\r\n<pre class=\"wp-block-code\"><code>#!pip install pingouin\r\n<span class=\"hljs-keyword\">import<\/span> pingouin <span class=\"hljs-keyword\">as<\/span> pg\r\npg.partial_corr(data=df, x=<span class=\"hljs-string\">'A'<\/span>, y=<span class=\"hljs-string\">'B'<\/span>, covar=<span class=\"hljs-string\">'Z'<\/span>)\r\n\r\n# Where,\r\n# Data = Name <span class=\"hljs-keyword\">of<\/span> the dataframe.\r\n# x  = Name <span class=\"hljs-keyword\">of<\/span> column <span class=\"hljs-keyword\">in<\/span> dataframe.\r\n# y = Name <span class=\"hljs-keyword\">of<\/span> column <span class=\"hljs-keyword\">in<\/span> dataframe.\r\n# z = variable to be excluded\/controlled.\r\n<\/code><\/pre>\r\n<!-- \/wp:code -->\r\n\r\n<!-- wp:image {\"id\":15988,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"297\" height=\"60\" class=\"wp-image-15988\" title=\"Partial Correlation calculation\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/10\/x2.jpg\" alt=\"Partial Correlation calculation\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>The partial correlation value we get after excluding &#8216;Z&#8217; is 0.910789 which corresponds to a strong positive correlation. To calculate the partial_correlation between multiple variables <code>.pcorr()<\/code> function is used.<\/p>\r\n<!-- \/wp:paragraph -->\r\n<p>&nbsp;<\/p>\r\n<!-- wp:code -->\r\n<pre class=\"wp-block-code\"><code><span class=\"hljs-selector-tag\">df<\/span><span class=\"hljs-selector-class\">.pcorr<\/span>()<span class=\"hljs-selector-class\">.round<\/span>(7)\r\n<\/code><\/pre>\r\n<!-- \/wp:code -->\r\n\r\n<!-- wp:image {\"id\":15989,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"227\" height=\"115\" class=\"wp-image-15989\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/10\/x3.jpg\" alt=\"\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:image {\"id\":16120,\"sizeSlug\":\"full\",\"linkDestination\":\"none\"} -->\r\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"520\" height=\"126\" class=\"wp-image-16120\" src=\"https:\/\/www.localhost:8080\/wp-content\/uploads\/2021\/10\/output_interpretation-2.png\" alt=\"\" srcset=\"https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/10\/output_interpretation-2.png 520w, https:\/\/machinelearningplus.com\/wp-content\/uploads\/2021\/10\/output_interpretation-2-300x73.png 300w\" sizes=\"(max-width: 520px) 100vw, 520px\" \/><\/figure>\r\n<!-- \/wp:image -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>In this case, the Partial correlation is coming out to be greater than the Pearson correlation. This can be the case when the 3rd variable is having a negative correlation relationship with one of the variables.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>Otherwise, typically, the Partial correlation is lesser than Pearson correlation.<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:heading -->\r\n<h2 id=\"limitations-of-partial-correlation\">Limitations of Partial correlation<\/h2>\r\n<!-- \/wp:heading -->\r\n\r\n<!-- wp:paragraph -->\r\n<p>Some limitations of partial_correlation analysis are:<\/p>\r\n<!-- \/wp:paragraph -->\r\n\r\n<!-- wp:list {\"ordered\":true} -->\r\n<ol>\r\n<li>The calculation of partial_correlation totally depends on the simple correlation coefficient. Simple correlation coefficient assumes relationships to be in linear form. But in real world the phenomena of linear relationships are quite rare.<\/li>\r\n<li>\r\n<p>When the order of partial_correlation coeffcient increases, its reliability decreases.<\/p>\r\n<\/li>\r\n<li>\r\n<p>Its calculation are quite difficult i.e.finding the value of &#8216;r&#8217; can be quite difficult and time consuming. But things are quite easy because there are so many softwares and libraries available to perform this job.<\/p>\r\n<\/li>\r\n<li>\r\n<p>As the number of controlling variables increases, calculating partial_correlation will get more complicated.<\/p>\r\n<\/li>\r\n<\/ol>\r\n<!-- \/wp:list -->","protected":false},"excerpt":{"rendered":"<p>What is Partial Correlation and it&#8217;s purpose Partial correlation is used to find the correlation between two variables (typically a dependent and an independent variable) with the effect of other influencing variables being controlled. For example, if there are three variables &#8216;A&#8217;, &#8216;B&#8217;, &#8216;Z&#8217;, If you want to find the relationship between &#8216;A&#8217; and &#8216;B&#8217; [&hellip;]<\/p>\n","protected":false},"author":31,"featured_media":16110,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"site-sidebar-layout":"default","site-content-layout":"default","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"default","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"categories":[8],"tags":[22,88],"class_list":["post-15984","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-statistics","tag-python","tag-statistics"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v28.0 - 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