Mark Cowley

nf-core/oncoanalyser: A comprehensive cancer DNA/RNA analysis and reporting pipeline

nf-carbonite: Comprehensive cancer RNAseq analysis pipeline

Expanding the utility of transcriptome analysis for mutation detection in high-risk childhood precision oncology

LINX: unscramble cancer genomes (Hartwig)

WISP: tumour fraction estimation from tumour-informed ctDNA analysis (Hartwig)

CIDER: extract Ig/Tcr CDR3 sequences from WGS for MRD (Hartwig)

vcf2mafR: Convert VCFs and VCF-related formats to MAF

sigverse: Simplifying mutational signature analysis in R

methyliser: EPIC array methylation levels

micrite: characterising microbes from cancer WGS data

ggoncoplot: easily create interactive oncoplots

ggEDA: exploratory data visualisations in R

GitHub repo

Bitbucket repo

ZeroDash (login required)

MTBnotes: childhood cancer knowledgebase (login required)

ZERO Childhood Cancer Data Portal

Data-driven insights to inform splice-altering variant assessment

Introme (GitHub)

SpliceVarDB

SAVvy (alpha)

Computational Biology Group - CCIA

Scopus Profile

ORCID

Google Scholar