davismcc/r-singlecell-img repository overview

⁠r-singlecell-img

Build a docker image with latest R and packages single-cell data analysis.

This image is available from: davismcc/r-singlecell-img⁠

This repo defines an installatin of the latest version of R bootstrapping the davismcc/r-tidybioc-img (and rocker/verse and bioconductor/release_core2) docker images.

This repo adds the following packages (if not already installed in the bootstrapped images):

• beachmat
• Canopy
• cardelino
• destiny
• edgeR
• limma
• MultiAssayExperiment
• org.Hs.eg.db
• org.Mm.eg.db
• pcaMethods
• Rtsne
• scater
• scran
• slalom
• vcfR