Genomics, Machine Learning, and Data for Bioinformatics

Genomics, Machine Learning, and Data for Bioinformatics

Home
Notes
Genomics and Genetics
Machine Learning
Data Strategy
Archive
About

The CAFA6 Challenge: predicting protein function from sequence

My strategy involves a dual towers network approach
READ THE LATEST
Arc Virtual Cell Challenge - part 4: Winners announced!
Did Bio-Foundation models outperform traditional statistical approaches?
 • gmdbioinformatics
New preprint: Multi-agent AI enables evidence-based cell annotation in single-cell transcriptomics
The paper on CyteType is on bioArXiv!
 • gmdbioinformatics
Arc Virtual Cell Challenge part 3: how to train your own Virtual Cell Model
Let's go through the example notebook on running STATE, Arc's Virtual Cell model.
 • gmdbioinformatics
Arc Virtual Cell Challenge part 2: What the Leaderboard Collapse Reveals About Model Evaluation
Some participants have already found a way to hack the score, exposing fundamental flaws in how bio-foundation models are evaluated.
 • gmdbioinformatics
Arc Virtual Cell Challenge part 1: my diary
A journey into bio-foundation models to predict perturbations in single-cell data
 • gmdbioinformatics
My Kaggle Playground competitions in 2025
Kaggle runs a series of Playground competitions designed to help people learn and practice machine learning in a fun, low-stakes environment.
 • gmdbioinformatics
Book review: The Breakthrough
A book about the history of Immunotherapy in Oncology.
 • gmdbioinformatics
Book Review: Empire of AI - by Karen Hao
The story of OpenAI, ChatGPT, and the impact on our society
 • gmdbioinformatics
Times Tables Animals
My 8yo son and I "vibe-coded" a maths game featuring cute animals
 • gmdbioinformatics
Genomics, Machine Learning, and Data for Bioinformatics
Genomics, Machine Learning, and Data for Bioinformatics
GMD Bioinformatics - from dalloliogm
Recommendations
View all 8
Single-Cell World
Single-Cell World
Cátia Moutinho
Sequence & Destroy by Evan Peikon
Sequence & Destroy by Evan Peikon
Evan Peikon
Kiin Bio Weekly
Kiin Bio Weekly
Kiin Bio
Paired Ends
Paired Ends
Stephen Turner
Bioinformatics: The Missing Semester
Bioinformatics: The Missing Semester
Aneesa Valentine

Genomics, Machine Learning, and Data for Bioinformatics

AboutArchiveRecommendationsSitemap
© 2026 gmdbioinformatics · Privacy ∙ Terms ∙ Collection notice
Start your SubstackGet the app
Substack is the home for great culture