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question on background peak selection

Open q226 opened this issue 4 years ago • 0 comments

Thanks for creating chromVAR, I have a question about whether the average accessibility or summed accessibility across cells were used in background peak selection? Maybe I missed something and please correct me if I am wrong, in the paper it mentioned the average accessibility whereas in the line 127 at script https://github.com/GreenleafLab/chromVAR/blob/master/R/background_peaks.R the summed fragment per peaks was used. Looking forward to hearing from you! Thanks!

q226 avatar Mar 06 '22 22:03 q226