netSmooth

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HI, I am trying to use monocle on the sample data provided by "https://cole-trapnell-lab.github.io/monocle3/docs/clustering/". However, at "cds

anksharm88

I am access the links given in you paper about the three datasets(Hematopoiesis,Embryonic cells,Glioblastoma), for the first dataset, I can't find the samplelabes, and the another two datasets I can't...

ztss

The possible usage of the DelayedArray data structure and the smoothing in chunks provides the possibility to reduce the memory requirements of the package. However, the calculation of the diffusion/smoothing...

nagoli104

Currently, netSmooth uses PCA or tSNE for dimensionality reduction, clustering, and robustness. We should also implement UMAP for this. - find the most suitable umap library for R - add...

jonathanronen

to make netSmooth work with large, disk-based matrices (the `DelayedArray`, `HDF5Array` class, probably). - make sure netSmooth uses the same amount of memory regardless of the size of the _data_...

jonathanronen