Error converting hdf5 file to zarr #1152
Description
Zarr version
2.13.2
Numcodecs version
0.10.2
Python Version
3.10.4
Operating System
Mac
Installation
pip
Description
TypeError: Cannot compare structured or void to non-void arrays when converting h5 file to zarr
Steps to reproduce
import urllib
import h5py
import zarr
testfile = urllib.URLopener()
testfile.retrieve(
"https://raw.githubusercontent.com/chanzuckerberg/cellxgene/main/example-dataset/pbmc3k.h5ad",
"pbmc3k.h5ad",
)
with h5py.File("pbmc3k.h5ad", "r") as h5_file:
zarr.copy_all(h5_file, zarr.open("pbmc3k.zarr", "w"))
Additional output
No response