Update GitHub uris to relfect new repo home for usethis (#748)

nathanjmcdougall · web-flow · commit a897e7ceda3e · 2025-06-15T16:05:44.000+12:00
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -1,11 +1,11 @@
 # Contributing
 
 Thank you for your interest in contributing to usethis! There are issues labeled
-[Good First Issue](https://github.com/nathanjmcdougall/usethis-python/issues?q=is%3Aissue%20state%3Aopen%20label%3A%22good%20first%20issue%22)
+[Good First Issue](https://github.com/usethis-python/usethis-python/issues?q=is%3Aissue%20state%3Aopen%20label%3A%22good%20first%20issue%22)
 which are good opportunities for new contributors.
 
 Since `usethis` is at early stages of development, please
-[ensure a GitHub Issue is opened](https://github.com/nathanjmcdougall/usethis-python/issues)
+[ensure a GitHub Issue is opened](https://github.com/usethis-python/usethis-python/issues)
 before starting work on a new feature or bug fix. This helps to ensure that the
 feature is aligned with the project's goals and that there is no duplication of effort. Sometimes these Issues don't have enough guidance in them, so consider asking for some more guidance from the ticket creator before getting started.
 
diff --git a/README.md b/README.md
@@ -1,17 +1,17 @@
 <h1 align="center">
-  <img src="https://raw.githubusercontent.com/nathanjmcdougall/usethis-python/refs/heads/main/docs/logo.svg"><br>
+  <img src="https://raw.githubusercontent.com/usethis-python/usethis-python/refs/heads/main/docs/logo.svg"><br>
 </h1>
 
 # usethis
 
-[![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/nathanjmcdougall/usethis-python/main/assets/badge/v1.json)](https://github.com/nathanjmcdougall/usethis-python)
+[![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/usethis-python/usethis-python/main/assets/badge/v1.json)](https://github.com/usethis-python/usethis-python)
 [![PyPI Version](https://img.shields.io/pypi/v/usethis.svg)](https://pypi.python.org/pypi/usethis)
 ![PyPI License](https://img.shields.io/pypi/l/usethis.svg)
 [![PyPI Supported Versions](https://img.shields.io/pypi/pyversions/usethis.svg)](https://pypi.python.org/pypi/usethis)
 [![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv)
 [![CodSpeed](https://img.shields.io/endpoint?url=https://codspeed.io/badge.json)](https://codspeed.io/nathanjmcdougall/usethis-python)
 [![codecov](https://codecov.io/gh/nathanjmcdougall/usethis-python/graph/badge.svg?token=MU1AZS0KHV)](https://codecov.io/gh/nathanjmcdougall/usethis-python)
-[![GitHub Actions Status](https://github.com/nathanjmcdougall/usethis-python/workflows/CI/badge.svg)](https://github.com/nathanjmcdougall/usethis-python/actions)
+[![GitHub Actions Status](https://github.com/usethis-python/usethis-python/workflows/CI/badge.svg)](https://github.com/usethis-python/usethis-python/actions)
 
 Automate Python project setup and development tasks that are otherwise performed manually.
 
@@ -26,7 +26,7 @@ usethis gives detailed messages about what it is doing (and what you need to do
 Inspired by an [**R** package of the same name](https://usethis.r-lib.org/index.html), this package brings a similar experience to the Python ecosystem as a CLI tool.
 
 > [!TIP]
-> usethis is great for fresh projects using [uv](https://docs.astral.sh/uv), but also supports updating existing projects. However, this should be considered experimental. If you encounter problems or have feedback, please [open an issue](https://github.com/nathanjmcdougall/usethis-python/issues/new?template=idea.md).
+> usethis is great for fresh projects using [uv](https://docs.astral.sh/uv), but also supports updating existing projects. However, this should be considered experimental. If you encounter problems or have feedback, please [open an issue](https://github.com/usethis-python/usethis-python/issues/new?template=idea.md).
 
 ## Highlights
 
@@ -337,7 +337,7 @@ Currently supported badges:
 - `usethis badge pre-commit` - [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
 - `usethis badge pypi` - [![PyPI Version](https://img.shields.io/pypi/v/usethis.svg)](https://pypi.python.org/pypi/usethis)
 - `usethis badge ruff` - [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
-- `usethis badge usethis` - [![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/nathanjmcdougall/usethis-python/main/assets/badge/v1.json)](https://github.com/nathanjmcdougall/usethis-python)
+- `usethis badge usethis` - [![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/usethis-python/usethis-python/main/assets/badge/v1.json)](https://github.com/usethis-python/usethis-python)
 - `usethis badge uv` - [![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv)
 
 Supported options:
@@ -455,27 +455,27 @@ If you're using Cookiecutter, then you can update to a latest version of a templ
 
 ## 🚀 Development
 
-[![Commits since latest release](https://img.shields.io/github/commits-since/nathanjmcdougall/usethis-python/latest.svg)](https://github.com/nathanjmcdougall/usethis-python/releases)
+[![Commits since latest release](https://img.shields.io/github/commits-since/nathanjmcdougall/usethis-python/latest.svg)](https://github.com/usethis-python/usethis-python/releases)
 
 ### Roadmap
 
 Major features planned for later in 2025 are:
 
 - Support for users who aren't using uv, e.g. poetry users,
-- Support for automated GitHub Actions workflows ([#57](https://github.com/nathanjmcdougall/usethis-python/issues/57)),
-- Support for a typechecker (likely Pyright, [#121](https://github.com/nathanjmcdougall/usethis-python/issues/121)), and
-- Support for documentation pages (likely using mkdocs, [#188](https://github.com/nathanjmcdougall/usethis-python/issues/188)).
+- Support for automated GitHub Actions workflows ([#57](https://github.com/usethis-python/usethis-python/issues/57)),
+- Support for a typechecker (likely Pyright, [#121](https://github.com/usethis-python/usethis-python/issues/121)), and
+- Support for documentation pages (likely using mkdocs, [#188](https://github.com/usethis-python/usethis-python/issues/188)).
 
-Other features are tracked in the [GitHub Issues](https://github.com/nathanjmcdougall/usethis-python/issues) page.
+Other features are tracked in the [GitHub Issues](https://github.com/usethis-python/usethis-python/issues) page.
 
 ### Contributing
 
 See the
-[CONTRIBUTING.md](https://github.com/nathanjmcdougall/usethis-python/blob/main/CONTRIBUTING.md)
+[CONTRIBUTING.md](https://github.com/usethis-python/usethis-python/blob/main/CONTRIBUTING.md)
 file.
 
 ## License
 
-usethis is licensed under the MIT license ([LICENSE](https://github.com/nathanjmcdougall/usethis-python/blob/main/LICENSE) or <https://opensource.org/licenses/MIT>)
+usethis is licensed under the MIT license ([LICENSE](https://github.com/usethis-python/usethis-python/blob/main/LICENSE) or <https://opensource.org/licenses/MIT>)
 
 Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in usethis by you, as defined in the Apache License, Version 2.0, (<https://www.apache.org/licenses/LICENSE-2.0>), shall be licensed under the MIT license, without any additional terms or conditions.
diff --git a/SECURITY.md b/SECURITY.md
@@ -10,4 +10,4 @@ These are not considered vulnerabilities in usethis.
 
 ## Reporting a vulnerability
 
-Please use the [GitHub vulnerability reporting form](https://github.com/nathanjmcdougall/usethis-python/security/advisories/new) to report a vulnerability.
+Please use the [GitHub vulnerability reporting form](https://github.com/usethis-python/usethis-python/security/advisories/new) to report a vulnerability.
diff --git a/docs/index.md b/docs/index.md
@@ -16,4 +16,4 @@ usethis gives detailed messages about what it is doing (and what you need to do
 Inspired by an [**R** package of the same name](https://usethis.r-lib.org/index.html),
 this package brings a similar experience to the Python ecosystem as a CLI tool.
 
-See the [README.md file](https://github.com/nathanjmcdougall/usethis-python/blob/main/README.md) for more information.
+See the [README.md file](https://github.com/usethis-python/usethis-python/blob/main/README.md) for more information.
diff --git a/pyproject.toml b/pyproject.toml
@@ -77,10 +77,10 @@ doc = [
 source = "vcs"
 
 [tool.hatch.metadata.hooks.vcs.urls]
-"Source Code" = "https://github.com/nathanjmcdougall/usethis-python"
-"Bug Tracker" = "https://github.com/nathanjmcdougall/usethis-python/issues"
-"Releases" = "https://github.com/nathanjmcdougall/usethis-python/releases"
-"Source Archive" = "https://github.com/nathanjmcdougall/usethis-python/archive/{commit_hash}.zip"
+"Source Code" = "https://github.com/usethis-python/usethis-python"
+"Bug Tracker" = "https://github.com/usethis-python/usethis-python/issues"
+"Releases" = "https://github.com/usethis-python/usethis-python/releases"
+"Source Archive" = "https://github.com/usethis-python/usethis-python/archive/{commit_hash}.zip"
 
 [tool.hatch.build.hooks.vcs]
 version-file = "src/usethis/_version.py"
@@ -130,7 +130,7 @@ lint.pydocstyle.convention = "google"
 ignore-words-list = [ "edn" ]
 
 [tool.deptry.per_rule_ignores]
-DEP002 = [ "click" ] # https://github.com/nathanjmcdougall/usethis-python/issues/623
+DEP002 = [ "click" ] # https://github.com/usethis-python/usethis-python/issues/623
 
 [tool.pyproject-fmt]
 keep_full_version = true
diff --git a/src/usethis/_core/badge.py b/src/usethis/_core/badge.py
@@ -61,7 +61,7 @@ def get_uv_badge() -> Badge:
 
 def get_usethis_badge() -> Badge:
     return Badge(
-        markdown="[![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/nathanjmcdougall/usethis-python/main/assets/badge/v1.json)](https://github.com/nathanjmcdougall/usethis-python)"
+        markdown="[![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/usethis-python/usethis-python/main/assets/badge/v1.json)](https://github.com/usethis-python/usethis-python)"
     )
 
 
diff --git a/src/usethis/_core/tool.py b/src/usethis/_core/tool.py
@@ -460,7 +460,7 @@ def _get_basic_rule_config() -> RuleConfig:
         if additional_selected and _tool.is_used():
             selected += additional_selected
     ignored = [
-        "PLR2004",  # https://github.com/nathanjmcdougall/usethis-python/issues/105
-        "SIM108",  # https://github.com/nathanjmcdougall/usethis-python/issues/118
+        "PLR2004",  # https://github.com/usethis-python/usethis-python/issues/105
+        "SIM108",  # https://github.com/usethis-python/usethis-python/issues/118
     ]
     return RuleConfig(selected=selected, ignored=ignored)
diff --git a/src/usethis/_integrations/ci/bitbucket/steps.py b/src/usethis/_integrations/ci/bitbucket/steps.py
@@ -155,7 +155,7 @@ def _add_step_in_default_via_doc(
 
     # N.B. Currently, we are not accounting for parallelism, whereas all these steps
     # could be parallel potentially.
-    # See https://github.com/nathanjmcdougall/usethis-python/issues/149
+    # See https://github.com/usethis-python/usethis-python/issues/149
     maj_versions = get_supported_major_python_versions()
     step_order = [
         "Run pre-commit",
diff --git a/src/usethis/_integrations/file/toml/io_.py b/src/usethis/_integrations/file/toml/io_.py
@@ -334,15 +334,15 @@ def _set_value_in_existing(
         assert isinstance(toml_document, TOMLDocument)
     else:
         # Note that this alternative logic is just to avoid a bug:
-        # https://github.com/nathanjmcdougall/usethis-python/issues/507
+        # https://github.com/usethis-python/usethis-python/issues/507
         TypeAdapter(dict).validate_python(current_container)
         assert isinstance(current_container, dict)
 
         unshared_keys = keys[len(current_keys) :]
 
         if len(current_keys) == 1:
             # In this case, we need to "seed" the section to avoid another bug:
-            # https://github.com/nathanjmcdougall/usethis-python/issues/558
+            # https://github.com/usethis-python/usethis-python/issues/558
 
             placeholder = {keys[0]: {keys[1]: {}}}
             toml_document = mergedeep.merge(toml_document, placeholder)  # type: ignore[reportArgumentType]
diff --git a/src/usethis/_integrations/uv/init.py b/src/usethis/_integrations/uv/init.py
@@ -42,7 +42,7 @@ def ensure_pyproject_toml(*, author: bool = True) -> None:
                 "--bare",
                 "--vcs=none",
                 f"--author-from={author_from}",
-                "--build-backend",  # https://github.com/nathanjmcdougall/usethis-python/issues/347
+                "--build-backend",  # https://github.com/usethis-python/usethis-python/issues/347
                 "hatch",  # until https://github.com/astral-sh/uv/issues/3957
                 usethis_config.cpd().as_posix(),
             ],
diff --git a/src/usethis/_tool/impl/pyproject_toml.py b/src/usethis/_tool/impl/pyproject_toml.py
@@ -55,7 +55,7 @@ def get_managed_files(self) -> list[Path]:
         ]
 
     def remove_managed_files(self) -> None:
-        # https://github.com/nathanjmcdougall/usethis-python/issues/416
+        # https://github.com/usethis-python/usethis-python/issues/416
         # We need to step through the tools and see if pyproject.toml is the active
         # config file.
         # If it isn't an active config file, no action is required.
diff --git a/src/usethis/_tool/impl/pytest.py b/src/usethis/_tool/impl/pytest.py
@@ -73,7 +73,7 @@ def get_config_spec(self) -> ConfigSpec:
             "addopts": [
                 "--import-mode=importlib",  # Now recommended https://docs.pytest.org/en/7.1.x/explanation/goodpractices.html#which-import-mode
                 "-ra",  # summary report of all results (sp-repo-review)
-                # Not --showlocals", because it's too verbose in some cases (https://github.com/nathanjmcdougall/usethis-python/issues/527)
+                # Not --showlocals", because it's too verbose in some cases (https://github.com/usethis-python/usethis-python/issues/527)
                 "--strict-markers",  # fail on unknown markers (sp-repo-review)
                 "--strict-config",  # fail on unknown config (sp-repo-review)
             ],
diff --git a/tests/usethis/_core/test_core_tool.py b/tests/usethis/_core/test_core_tool.py
@@ -180,7 +180,7 @@ def test_codespell_rc_file(self, uv_init_dir: Path):
         def test_adding_twice(
             self, uv_init_dir: Path, capfd: pytest.CaptureFixture[str]
         ):
-            # https://github.com/nathanjmcdougall/usethis-python/issues/509
+            # https://github.com/usethis-python/usethis-python/issues/509
 
             with change_cwd(uv_init_dir), files_manager():
                 # Arrange
@@ -196,7 +196,7 @@ def test_adding_twice(
             assert out == ("☐ Run 'codespell' to run the Codespell spellchecker.\n")
 
         def test_setup_cfg_nonempty(self, uv_init_dir: Path):
-            # https://github.com/nathanjmcdougall/usethis-python/issues/542
+            # https://github.com/usethis-python/usethis-python/issues/542
             # Basically we want to make sure the "first_content" resolution strategy
             # works correctly.
 
@@ -218,7 +218,7 @@ def test_setup_cfg_nonempty(self, uv_init_dir: Path):
             )
 
         def test_setup_cfg_empty(self, uv_init_dir: Path):
-            # https://github.com/nathanjmcdougall/usethis-python/issues/542
+            # https://github.com/usethis-python/usethis-python/issues/542
             # Basically we want to make sure the "first_content" resolution strategy
             # works correctly.
 
@@ -402,7 +402,7 @@ class .*\\bProtocol\\):
     @pytest.mark.usefixtures("_vary_network_conn")
     def test_after_codespell(self, tmp_path: Path):
         # To check the config is valid
-        # https://github.com/nathanjmcdougall/usethis-python/issues/558
+        # https://github.com/usethis-python/usethis-python/issues/558
 
         # Arrange
         (tmp_path / "pyproject.toml").write_text("""\
@@ -933,7 +933,7 @@ def test_toml_contracts(self, tmp_path: Path, monkeypatch: pytest.MonkeyPatch):
 """)
 
         @pytest.mark.xfail(
-            reason="https://github.com/nathanjmcdougall/usethis-python/issues/502"
+            reason="https://github.com/usethis-python/usethis-python/issues/502"
         )
         def test_pre_commit_used_not_uv(
             self, tmp_path: Path, capfd: pytest.CaptureFixture[str]
@@ -1252,7 +1252,7 @@ def test_stdout_when_cant_find_package(
             self, tmp_path: Path, capfd: pytest.CaptureFixture[str]
         ):
             # Having an issue where the message is being repeated multiple times
-            # https://github.com/nathanjmcdougall/usethis-python/pull/501#issuecomment-2784482750
+            # https://github.com/usethis-python/usethis-python/pull/501#issuecomment-2784482750
 
             # Act
             with change_cwd(tmp_path), files_manager(), usethis_config.set(frozen=True):
@@ -2244,7 +2244,7 @@ def test_pyproject_without_ini_priority(self, uv_init_repo_dir: Path):
             assert (uv_init_repo_dir / "setup.cfg").read_text()
 
         def test_pythonpath_needed(self, tmp_path: Path):
-            # https://github.com/nathanjmcdougall/usethis-python/issues/347
+            # https://github.com/usethis-python/usethis-python/issues/347
 
             # Arrange
             # No build backend, so finding './src' for imports won't work unless we
@@ -2675,7 +2675,7 @@ def test_creates_pyproject_toml(
         def test_existing_ruff_toml(
             self, uv_init_dir: Path, capfd: pytest.CaptureFixture[str]
         ):
-            # https://github.com/nathanjmcdougall/usethis-python/issues/420
+            # https://github.com/usethis-python/usethis-python/issues/420
 
             # Arrange
             (uv_init_dir / "ruff.toml").write_text("""\
@@ -2803,7 +2803,7 @@ def test_blank_slate(self, uv_init_dir: Path):
 
         @pytest.mark.skipif(
             not os.getenv("CI"),
-            reason="https://github.com/nathanjmcdougall/usethis-python/issues/45",
+            reason="https://github.com/usethis-python/usethis-python/issues/45",
         )
         @pytest.mark.usefixtures("_vary_network_conn")
         def test_roundtrip(self, uv_init_dir: Path):
@@ -2958,7 +2958,7 @@ def test_use_after(self, uv_init_repo_dir: Path):
 
         @pytest.mark.skipif(
             not os.getenv("CI"),
-            reason="https://github.com/nathanjmcdougall/usethis-python/issues/45",
+            reason="https://github.com/usethis-python/usethis-python/issues/45",
         )
         @pytest.mark.usefixtures("_vary_network_conn")
         def test_remove(
diff --git a/tests/usethis/_integrations/file/pyproject_toml/test_pyproject_toml_io_.py b/tests/usethis/_integrations/file/pyproject_toml/test_pyproject_toml_io_.py
@@ -270,7 +270,7 @@ def test_update_not_exists_ok(self, tmp_path: Path):
                 )
 
         def test_coverage_to_codespell(self, tmp_path: Path):
-            # https://github.com/nathanjmcdougall/usethis-python/issues/558
+            # https://github.com/usethis-python/usethis-python/issues/558
 
             # Arrange
             (tmp_path / "pyproject.toml").write_text("""\
diff --git a/tests/usethis/_integrations/file/toml/test_toml_io_.py b/tests/usethis/_integrations/file/toml/test_toml_io_.py
@@ -120,7 +120,7 @@ def relative_path(self) -> Path:
             )
 
         def test_set_high_levels_of_nesting_in_existing(self, tmp_path: Path) -> None:
-            # https://github.com/nathanjmcdougall/usethis-python/issues/507
+            # https://github.com/usethis-python/usethis-python/issues/507
             # Arrange
             class MyTOMLFileManager(TOMLFileManager):
                 @property
@@ -161,7 +161,7 @@ def relative_path(self) -> Path:
             )
 
         def test_tomlkit_high_levels_of_nesting_in_existing(self) -> None:
-            # To help debug https://github.com/nathanjmcdougall/usethis-python/issues/507
+            # To help debug https://github.com/usethis-python/usethis-python/issues/507
             # This proves that dottedkey works.
 
             # Arrange
diff --git a/tests/usethis/_integrations/uv/test_call.py b/tests/usethis/_integrations/uv/test_call.py
@@ -49,7 +49,7 @@ def mock_call_subprocess(args: list[str], *, cwd: Path | None = None) -> str:
     def test_handle_missing_version(
         self, tmp_path: Path, capfd: pytest.CaptureFixture[str]
     ):
-        # https://github.com/nathanjmcdougall/usethis-python/issues/299
+        # https://github.com/usethis-python/usethis-python/issues/299
 
         # Arrange
         (tmp_path / "pyproject.toml").write_text(
diff --git a/tests/usethis/_integrations/uv/test_deps.py b/tests/usethis/_integrations/uv/test_deps.py
@@ -217,7 +217,7 @@ def test_empty_deps(self, uv_init_dir: Path, capfd: pytest.CaptureFixture[str]):
 
     @pytest.mark.usefixtures("_vary_network_conn")
     def test_extra_when_nonextra_already_present(self, uv_init_dir: Path):
-        # https://github.com/nathanjmcdougall/usethis-python/issues/227
+        # https://github.com/usethis-python/usethis-python/issues/227
         with change_cwd(uv_init_dir), PyprojectTOMLManager():
             # Arrange
             add_deps_to_group([Dependency(name="coverage")], "test")
diff --git a/tests/usethis/_interface/test_docstyle.py b/tests/usethis/_interface/test_docstyle.py
diff --git a/tests/usethis/_interface/test_interface_badge.py b/tests/usethis/_interface/test_interface_badge.py
diff --git a/tests/usethis/_interface/test_tool.py b/tests/usethis/_interface/test_tool.py
diff --git a/tests/usethis/_tool/impl/test_coverage_py.py b/tests/usethis/_tool/impl/test_coverage_py.py
diff --git a/tests/usethis/_tool/test_base.py b/tests/usethis/_tool/test_base.py

Original file line number	Diff line number	Diff line change
`@@ -10,4 +10,4 @@ These are not considered vulnerabilities in usethis.`
`10`	`10`
`11`	`11`	`## Reporting a vulnerability`
`12`	`12`
`13`		`-Please use the [GitHub vulnerability reporting form](https://github.com/nathanjmcdougall/usethis-python/security/advisories/new) to report a vulnerability.`
	`13`	`+Please use the [GitHub vulnerability reporting form](https://github.com/usethis-python/usethis-python/security/advisories/new) to report a vulnerability.`
Original file line number	Diff line number	Diff line change
`@@ -61,7 +61,7 @@ def get_uv_badge() -> Badge:`
`61`	`61`
`62`	`62`	`def get_usethis_badge() -> Badge:`
`63`	`63`	`return Badge(`
`64`		`- markdown="[![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/nathanjmcdougall/usethis-python/main/assets/badge/v1.json)](https://github.com/nathanjmcdougall/usethis-python)"`
	`64`	`+ markdown="[![usethis](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/usethis-python/usethis-python/main/assets/badge/v1.json)](https://github.com/usethis-python/usethis-python)"`
`65`	`65`	`)`
`66`	`66`
`67`	`67`