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Use --source-root for file discovery, add --strict, add missing docstrings

Agent-Logs-Url: https://github.com/usethis-python/usethis-python/sessions/18fc9b90-3ca4-4cb0-87fd-885ed6de891c Co-authored-by: nathanjmcdougall <18602289+nathanjmcdougall@users.noreply.github.com>

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