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Snippy / Samtools issue in conda. Remove version cehcks?

Status: Open.

#628 In tseemann/snippy;

· KasperThystrup opened on Jan 9, 2026

Snippy discards variants present in heterozygosity even if they are majority

Status: Open.

#627 In tseemann/snippy;

· victor5lm opened on Dec 26, 2025

Issue with shredding contigs

Status: Open.

#619 In tseemann/snippy;

· djwbdjg opened on Oct 10, 2025

Questions regarding the software output results

Status: Open.

#617 In tseemann/snippy;

· lanlan0210 opened on Jun 17, 2025

Failure to extract bases from fasta reference

Status: Open.

#616 In tseemann/snippy;

· cizydorczyk opened on Jun 10, 2025

Unfixed_SNPs_Calling

Status: Open.

#615 In tseemann/snippy;

· Tuberculosis-Public-Health-Lab opened on Jun 10, 2025

Region limitation error in Snippy final.vcf

Status: Open.

#614 In tseemann/snippy;

· KuBaLa-biomedicine opened on May 19, 2025

Error trying to use snippy with GBK reference: snps.log

Status: Open.

#613 In tseemann/snippy;

· raeldesu opened on Apr 25, 2025

Error following samclip and bam_sort_core

Status: Open.

#611 In tseemann/snippy;

· mweberr opened on Mar 17, 2025

PackagesNotFoundError unable to install snp-sites and snippy via bioconda

Status: Open.

#610 In tseemann/snippy;

· gloriajzhou opened on Mar 13, 2025

Error in snippy-vcf_to_tab when features overlap

Status: Open.

#609 In tseemann/snippy;

· pablo-aja-macaya opened on Feb 24, 2025

Zero variants identified using snippy 4.6.0, 4.6.0-5 recipe on bioconda - error due to "vt normalize" at the filtering step

Status: Open.

#608 In tseemann/snippy;

· stefcamp opened on Feb 4, 2025