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Translational Genomics Research Institute

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  1. jetstream jetstream Public

    Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- acyclic graphs (DAGs), and execution on batch schedulers

    Python 16 1

  2. phoenix phoenix Public

    Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38

    EJS 17 5

  3. jetstream_resources jetstream_resources Public

    Collection of scripts and README files tracking the source and generation of reference genomes and annotation files

    Shell 3 1

  4. lumosVar2 lumosVar2 Public

    Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/normal pair, longitudinal samples, primary/met, etc. Can also …

    MATLAB 10 1

Repositories

Showing 10 of 42 repositories
  • containers Public
    tgen/containers’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jan 12, 2026
  • GrandCanyon Public

    JetStream Workflow to support T2T Consortium CHM13 reference genome

    tgen/GrandCanyon’s past year of commit activity
    Jinja 0 MIT 0 24 0 Updated Dec 10, 2025
  • MMRF_CoMMpass Public

    A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.

    tgen/MMRF_CoMMpass’s past year of commit activity
    Shell 22 MIT 7 4 0 Updated Nov 23, 2025
  • neuro-covid-EV-paper Public

    code for plasma EV transcriptomic analysis across COVID-19 severity

    tgen/neuro-covid-EV-paper’s past year of commit activity
    R 0 0 0 0 Updated Oct 27, 2025
  • tau-tissue-specificity Public

    calculates tau tissue specificity scores from gtex data

    tgen/tau-tissue-specificity’s past year of commit activity
    R 1 0 0 0 Updated Sep 25, 2025
  • gencode-plus-lncipedia Public

    non-redundant genome annotation combining GENCODE 40 and lncipedia 5.2

    tgen/gencode-plus-lncipedia’s past year of commit activity
    R 0 0 0 0 Updated Sep 18, 2025
  • tempe Public

    A container focused and streamlined iteration of the Phoenix pipeline

    tgen/tempe’s past year of commit activity
    Jinja 2 GPL-3.0 1 16 0 Updated Aug 29, 2025
  • jetstream_fastq_to_json Public

    A python script to generate a jetstream pipeline compatible json from fastqs

    tgen/jetstream_fastq_to_json’s past year of commit activity
    Python 0 0 0 0 Updated Aug 12, 2025
  • Keats_Lab_Public Public

    Public resources from the Keats Lab at TGen

    tgen/Keats_Lab_Public’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jul 3, 2025
  • snpSniffer Public

    Tool for checking genotype concordance between multiple assays

    tgen/snpSniffer’s past year of commit activity
    Shell 0 MIT 3 1 0 Updated May 23, 2025
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