Materials for seagrass transect data dashboard, link.

This repository is distinct from seagrasstransect that includes a dashboard for the seagrass transect training data. This repository includes a dashboard for the entire transect database for Tampa Bay.

Each year, transect survey data are updated for various TBEP reporting products. This typically occurs late October or early November. The following steps are taken to update these products.

1. Update transect dashboard.
   • Run R/dat_proc.R to update the files data/transect.RData, data/transectocc.RData, and data/transectdem.RData
   • Pull updated repository to TBEP server
2. Update files on https://github.com/tbep-tech/seagrasstransect
   • Run wateratlas_source.R. This will update the files data/trndat.RData, docs/reportcard.jpg, docs/freqocc.jpg, docs/freqocctab.html, docs/trantab.csv, docs/tranocctab.csv, docs/metadata.html and render the README file to show the update date.
   • Graphics created here appear on https://tbep.org/seagrass-assessment/ and https://tampabay.wateratlas.usf.edu/seagrass-monitoring/
3. Update tbeptools at https://github.com/tbep-tech/tbeptools
   • Recreate the file data/transect.RData by running the example code in R/transect.R. Update the Roxygen to change the date of update and row count in the file.
   • Change year to current in the files (one instance in each file) R/anlz_transectave.R, R/anlz_transectavespp.R, R/show_compplot.R, R/show_transect.R, R/show_transectavespp.R, R/show_transectmatrix.R, R/show_transectsum.R, vignettes/seagrasstransect.Rmd.
   • Run devtools::document() to update documentation
   • Update date and version in DESCRIPTION