Skip to content

Installation issue: binutils 2.42 on macOS #42947

Closed
#42949
Closed
Installation issue: binutils 2.42 on macOS#42947
#42949
Labels
build-error
@berquist

Description

@berquist
berquist
opened on Mar 1, 2024

Steps to reproduce the issue

$ spack spec -I binutils@2.42 %apple-clang
 -   binutils@2.42%apple-clang@15.0.0~gas~gprofng~headers~interwork~ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=darwin-sonoma-m2
[+]      ^diffutils@3.9%apple-clang@15.0.0 build_system=autotools arch=darwin-sonoma-m2
[+]          ^libiconv@1.17%apple-clang@15.0.0 build_system=autotools libs=shared,static arch=darwin-sonoma-m2
[+]      ^gmake@4.4.1%apple-clang@15.0.0~guile build_system=generic arch=darwin-sonoma-m2
[+]      ^gnuconfig@2022-09-17%apple-clang@15.0.0 build_system=generic arch=darwin-sonoma-m2
[+]      ^pkgconf@1.9.5%apple-clang@15.0.0 build_system=autotools arch=darwin-sonoma-m2
[+]      ^zlib-ng@2.1.5%apple-clang@15.0.0+compat+opt build_system=autotools arch=darwin-sonoma-m2
[+]      ^zstd@1.5.5%apple-clang@15.0.0+programs build_system=makefile compression=none libs=shared,static arch=darwin-sonoma-m2

Error message

Error message for darwin-sonoma-m2, essentially same for GCC and Apple Clang 
libtool: link: /Users/ejberqu/development/forks/spack/lib/spack/env/clang/clang -dynamiclib  -o .libs/libctf-nobfd.0.dylib  .libs/libctf_nobfd_la-ctf-archive.o .libs/libctf_nobfd_la-ctf-dump.o .libs/libctf_nobfd_la-ctf-create.o .libs/libctf_nobfd_la-ctf-decl.o .libs/libctf_nobfd_la-ctf-error.o .libs/libctf_nobfd_la-ctf-hash.o .libs/libctf_nobfd_la-ctf-labels.o .libs/libctf_nobfd_la-ctf-dedup.o .libs/libctf_nobfd_la-ctf-link.o .libs/libctf_nobfd_la-ctf-lookup.o .libs/libctf_nobfd_la-ctf-open.o .libs/libctf_nobfd_la-ctf-serialize.o .libs/libctf_nobfd_la-ctf-sha1.o .libs/libctf_nobfd_la-ctf-string.o .libs/libctf_nobfd_la-ctf-subr.o .libs/libctf_nobfd_la-ctf-types.o .libs/libctf_nobfd_la-ctf-util.o   -L/private/var/folders/mv/cxdf9v7s4tj9_xrqn0bjmmhw0046c5/T/ejberqu/spack-stage/spack-stage-binutils-2.42-slnhx2cd627q4yns4zvxbt72togvs66j/spack-src/libctf/../libiberty/pic -liberty -lz    -install_name  /Users/ejberqu/development/forks/spack/opt/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder_/darwin-sonoma-m2/apple-clang-15.0.0/binutils-2.42-slnhx2cd627q4yns4zvxbt72togvs66j/lib/libctf-nobfd.0.dylib -compatibility_version 1 -current_version 1.0  -Wl,-exported_symbols_list,.libs/libctf-nobfd-symbols.expsym
ld: Undefined symbols:
  _ctf_open, referenced from:
      _ctf_link_add_ctf in libctf_nobfd_la-ctf-link.o
      _ctf_link_deduplicating_count_inputs in libctf_nobfd_la-ctf-link.o
Error message for darwin-ventura-skylake 
2024-03-01T16:33:46.3655620Z libtool: link: /Users/runner/work/sst-spack/sst-spack/spack/lib/spack/env/clang/clang -dynamiclib  -o .libs/libctf-nobfd.0.dylib  .libs/libctf_nobfd_la-ctf-archive.o .libs/libctf_nobfd_la-ctf-dump.o .libs/libctf_nobfd_la-ctf-create.o .libs/libctf_nobfd_la-ctf-decl.o .libs/libctf_nobfd_la-ctf-error.o .libs/libctf_nobfd_la-ctf-hash.o .libs/libctf_nobfd_la-ctf-labels.o .libs/libctf_nobfd_la-ctf-dedup.o .libs/libctf_nobfd_la-ctf-link.o .libs/libctf_nobfd_la-ctf-lookup.o .libs/libctf_nobfd_la-ctf-open.o .libs/libctf_nobfd_la-ctf-serialize.o .libs/libctf_nobfd_la-ctf-sha1.o .libs/libctf_nobfd_la-ctf-string.o .libs/libctf_nobfd_la-ctf-subr.o .libs/libctf_nobfd_la-ctf-types.o .libs/libctf_nobfd_la-ctf-util.o   -L/private/var/folders/f8/xn9w26457_v2fc5qzhbrlyj00000gn/T/runner/spack-stage/spack-stage-binutils-2.42-zsxtatmgqkdn7tvak2zxcp4nvxn7wit3/spack-src/libctf/../libiberty/pic -liberty -lz    -install_name  /Users/runner/work/sst-spack/sst-spack/spack/opt/spack/[padded-to-128-chars]/darwin-ventura-skylake/apple-clang-15.0.0/binutils-2.42-zsxtatmgqkdn7tvak2zxcp4nvxn7wit3/lib/libctf-nobfd.0.dylib -compatibility_version 1 -current_version 1.0  -Wl,-exported_symbols_list,.libs/libctf-nobfd-symbols.expsym
2024-03-01T16:33:46.4761430Z ld: Undefined symbols:
2024-03-01T16:33:46.5061900Z   _ctf_open, referenced from:
2024-03-01T16:33:46.5064060Z       _ctf_link_add_ctf in libctf_nobfd_la-ctf-link.o
2024-03-01T16:33:46.5065040Z       _ctf_link_deduplicating_count_inputs in libctf_nobfd_la-ctf-link.o

Information on your system

  • Spack: 0.22.0.dev0 (763f444)
  • Python: 3.9.6
  • Platform: darwin-sonoma-m2
  • Concretizer: clingo

Additional information

@alalazo

spack-build-out-m2-apple-clang.txt
spack-build-out-m2-gcc.txt

I don't have the full build logs from the Intel machines right now, they're GitHub runners.

I have a branch with a requires that locks out 2.42 from macOS, but will try this patch instead, from Homebrew/homebrew-core#161274:

diff --git a/gold/output.cc b/gold/output.cc
index ead67f20363..98b2f25c18b 100644
--- a/gold/output.cc
+++ b/gold/output.cc
@@ -29,7 +29,9 @@
 #include <unistd.h>
 #include <sys/stat.h>
 #include <algorithm>
+#ifndef __APPLE__
 #include <uchar.h>
+#endif
 
 #ifdef HAVE_SYS_MMAN_H
 #include <sys/mman.h>
diff --git a/gold/stringpool.cc b/gold/stringpool.cc
index d8f38cfabc1..e04909edad1 100644
--- a/gold/stringpool.cc
+++ b/gold/stringpool.cc
@@ -25,7 +25,9 @@
 #include <cstring>
 #include <algorithm>
 #include <vector>
+#ifndef __APPLE__
 #include <uchar.h>
+#endif
 
 #include "output.h"
 #include "parameters.h"

General information

  • I have run spack debug report and reported the version of Spack/Python/Platform
  • I have run spack maintainers <name-of-the-package> and @mentioned any maintainers
  • I have uploaded the build log and environment files
  • I have searched the issues of this repo and believe this is not a duplicate

Metadata

Metadata

Assignees

No one assigned

    Labels

    build-error

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions