9.14.8 (2026-01-16)

Bug Fixes

• ensure that git repos backing source files are fetched only once per run (#3928) (2ebcd85)

Reverts

• Config validation skip for remote jobs (#3924) (cc7c6f0)

Documentation

• Use snakemake logo as favicon (#3914) (24cdf1e)

9.14.7 (2026-01-15)

Bug Fixes

• report psutil errors in case benchmark fails (#3925) (293ec40)
• reuse async runner to prevent port exhaustion (#3911) (385e0ca)

9.14.6 (2026-01-08)

Bug Fixes

• create local clone of git repos for source files from hosting providers (#3643) (d2f8aba)
• create potentially missing .snakemake folder in case of very long command lines for spawned jobs (#3894) (4b431dd)
• make ilp solver enumeration lazy (#3900) (30e1509)
• Prevent broken report_href links by using deterministic report IDs with fixed prefix length (#3889) (6d8f4d8)
• refactor LoggerManager setup and scope (#3851) (f46d904)
• yield proper error message in case a local git source file is not retrievable (#3892) (ed79cae)

Documentation

• explain how to pass nested config via CLI (#3885) (9d8c539)

9.14.5 (2025-12-15)

Bug Fixes

• remove erroneous assert in the scheduler (is_main_process) (#3881) (d5acdd1)

9.14.4 (2025-12-09)

Bug Fixes

• fix follow-up issue with group job handling when retrieving storage (#3871) (20b99ac)

9.14.3 (2025-12-08)

Bug Fixes

• ensure that queue input jobs wait if the queue is still empty upon job creation (#3866) (555ab6a)
• fix issues with cyclic dependencies when using the update and before_update flag (#3857) (21cc94e)

9.14.2 (2025-12-05)

Bug Fixes

• correctly handle groups when retrieving storage input (#3861) (8c818f4)

9.14.1 (2025-12-02)

Bug Fixes

• always raise FileNotFoundError in case of missing files in resource expressions that do size evaluations (#3854) (0f1991a)
• ensure that spawned jobs do not handle retries themselves. The main process does that. (#3855) (396271b)

9.14.0 (2025-11-27)

Features

• Support Hy in script directive (#3824) (2329c9e)

Bug Fixes

• Add support for pathlib in notebook field (#3811) (7b2180a)
• Addressed race condition in workdir_handler.py (#3844) (8dbfcfb)
• cleanup update-marked output files of failed jobs if there was no backup to restore them (#3843) (41f1ce8)
• correct Windows callable path handling (#3832) (5caad70)
• expand env vars on resources (#3823) (fcfa1bc)
• fix backup for output marked by update (#3839) (09c64b7)
• Minor fixes/additions to logging module. (#3802) (3b3986d)
• mount local storage prefix into containers (#3840) (f1e8b62)
• properly format input/output files in case of missing rule to produce them (#3849) (69d5d24)
• Unpack AnnotatedString in _apply_wildcards (#3798) (7886508)

Performance Improvements

• retrieve storage inputs immediately before scheduling jobs instead of before running the entire workflow (#3850) (4ac6cda)

9.13.7 (2025-11-07)

Bug Fixes

• backup output files marked for update and restore them in case of job failures (#3833) (3e0904d)