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snakemake report does not show apptainer in software section #3406

@johausmann

Description

@johausmann

Is your feature request related to a problem? Please describe.

A snakemake report shows input, output, code and the software stack for each rule executed. Currently it only shows the contents of the conda directive and not whether a container was used.

Describe the solution you'd like

The software section for each rule in the report should show the conda env definition and the container image URL.

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