perf: query updated input files in parallel#3266
Merged
johanneskoester merged 4 commits intomainfrom Jan 23, 2025
Merged
Conversation
Contributor
📝 WalkthroughWalkthroughThe pull request modifies the Changes
Possibly related PRs
📜 Recent review detailsConfiguration used: CodeRabbit UI 📒 Files selected for processing (1)
🚧 Files skipped from review as they are similar to previous changes (1)
⏰ Context from checks skipped due to timeout of 90000ms (31)
Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media? 🪧 TipsChatThere are 3 ways to chat with CodeRabbit:
Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. CodeRabbit Commands (Invoked using PR comments)
Other keywords and placeholders
CodeRabbit Configuration File (
|
|
johanneskoester
pushed a commit
that referenced
this pull request
Feb 12, 2025
🤖 I have created a release *beep* *boop* --- ## [8.28.0](v8.27.1...v8.28.0) (2025-02-12) ### Features * do not fail if --cache is active but no SNAKEMAKE_OUTPUT_CACHE env var is defined. Instead, print a warning that explains the options. ([#3270](#3270)) ([9610f7c](9610f7c)) ### Bug Fixes * do not use outdated metadata for rerun triggers (only warn about it) ([#3259](#3259)) ([d766a48](d766a48)) * ensure that exceptions print storage queries instead of local copies of remote files ([#3258](#3258)) ([e5d8ec1](e5d8ec1)) * fix error message of evaluate helper function ([#3282](#3282)) ([9483a64](9483a64)) * Revert cleaning of env vars in apptainer ([#3285](#3285)) ([e79a51b](e79a51b)) ### Performance Improvements * compare checksums of input files <= 1MB (before (10KB) ([#3267](#3267)) ([ba017bb](ba017bb)) * query updated input files in parallel ([#3266](#3266)) ([bc4fcee](bc4fcee)) ### Documentation * Adds instructions for using syntax highlighting with lazy.nvim ([#3246](#3246)) ([7a75043](7a75043)) * Fix typos in basic API example ([#3277](#3277)) ([8782219](8782219)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2 tasks
kjohnsen
pushed a commit
to kjohnsen/snakemake
that referenced
this pull request
Dec 15, 2025
<!--Add a description of your PR here--> ### QC <!-- Make sure that you can tick the boxes below. --> * [x] The PR contains a test case for the changes or the changes are already covered by an existing test case. * [x] The documentation (`docs/`) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake). <!-- This is an auto-generated comment: release notes by coderabbit.ai --> ## Summary by CodeRabbit - **Refactor** - Enhanced clarity of comments in the `update_needrun` method regarding input checksums. - Improved handling of asynchronous operations related to input file checks. - Adjusted overall structure of the `update_needrun` method for better readability and maintainability. <!-- end of auto-generated comment: release notes by coderabbit.ai -->
kjohnsen
pushed a commit
to kjohnsen/snakemake
that referenced
this pull request
Dec 15, 2025
🤖 I have created a release *beep* *boop* --- ## [8.28.0](snakemake/snakemake@v8.27.1...v8.28.0) (2025-02-12) ### Features * do not fail if --cache is active but no SNAKEMAKE_OUTPUT_CACHE env var is defined. Instead, print a warning that explains the options. ([snakemake#3270](snakemake#3270)) ([9610f7c](snakemake@9610f7c)) ### Bug Fixes * do not use outdated metadata for rerun triggers (only warn about it) ([snakemake#3259](snakemake#3259)) ([d766a48](snakemake@d766a48)) * ensure that exceptions print storage queries instead of local copies of remote files ([snakemake#3258](snakemake#3258)) ([e5d8ec1](snakemake@e5d8ec1)) * fix error message of evaluate helper function ([snakemake#3282](snakemake#3282)) ([9483a64](snakemake@9483a64)) * Revert cleaning of env vars in apptainer ([snakemake#3285](snakemake#3285)) ([e79a51b](snakemake@e79a51b)) ### Performance Improvements * compare checksums of input files <= 1MB (before (10KB) ([snakemake#3267](snakemake#3267)) ([ba017bb](snakemake@ba017bb)) * query updated input files in parallel ([snakemake#3266](snakemake#3266)) ([bc4fcee](snakemake@bc4fcee)) ### Documentation * Adds instructions for using syntax highlighting with lazy.nvim ([snakemake#3246](snakemake#3246)) ([7a75043](snakemake@7a75043)) * Fix typos in basic API example ([snakemake#3277](snakemake#3277)) ([8782219](snakemake@8782219)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
QC
docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).Summary by CodeRabbit
update_needrunmethod regarding input checksums.update_needrunmethod for better readability and maintainability.