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docs: Fix missing spaces in CLI help text#3146

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johanneskoester merged 1 commit intosnakemake:mainfrom
peterjc:patch-2
Oct 17, 2024
Merged

docs: Fix missing spaces in CLI help text#3146
johanneskoester merged 1 commit intosnakemake:mainfrom
peterjc:patch-2

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@peterjc peterjc commented Oct 16, 2024 •
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QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

Summary by CodeRabbit

  • New Features

    • Enhanced command-line argument parser for improved user experience.

  • Bug Fixes

    • Refined error messages for better clarity during logging issues.

  • Documentation

    • Updated help descriptions for command-line options for clarity and consistency.

  • Style

    • Improved formatting and readability of argument definitions and code structure.

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coderabbitai bot commented Oct 16, 2024 •
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Walkthrough

The changes in this pull request primarily involve modifications to the snakemake/cli.py file, focusing on enhancing the command-line argument parser. Key updates include improved help text for various command-line options, better organization of argument groups, minor adjustments in argument parsing logic, refined error handling, and general code formatting improvements. These modifications aim to clarify user instructions and enhance the overall readability of the code.

Changes

File Change Summary
snakemake/cli.py - Updated help text for command-line arguments for clarity and consistency.
- Enhanced organization and formatting of argument groups.
- Minor adjustments in argument parsing logic, including clearer handling of the --quiet flag.
- Improved error messages and exception handling in setup_log_handlers.
- General code formatting improvements for better readability.

Possibly related PRs

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📥 Commits

Files that changed from the base of the PR and between 520f2e4 and d839594.

📒 Files selected for processing (1)
  • snakemake/cli.py (7 hunks)
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📓 Path-based instructions (1)
snakemake/cli.py (1)

Pattern **/*.py: Do not try to improve formatting.
Do not suggest type annotations for functions that are defined inside of functions or methods.
Do not suggest type annotation of the self argument of methods.
Do not suggest type annotation of the cls argument of classmethods.
Do not suggest return type annotation if a function or method does not contain a return statement.

🔇 Additional comments (7)
snakemake/cli.py (7)

Line range hint 447-458: Improved help text formatting.

The addition of an extra space before "Usually, you should not need to specify this." in the --snakefile argument help text enhances readability. This is a minor but positive change.

469-472: Improved help text punctuation.

The addition of a period at the end of the sentence in the --cores argument help text improves grammatical correctness. This minor change enhances the overall quality of the documentation.

514-515: Consistent improvement in help text punctuation.

The addition of a period at the end of the sentence in the --resources argument help text improves grammatical correctness. This change is consistent with the similar improvement made to the --cores argument help text, enhancing the overall quality and consistency of the documentation.

837-841: Significantly improved help text for --wms-monitor-arg.

The help text for the --wms-monitor-arg has been substantially rewritten, resulting in a clearer and more informative explanation. The new text provides:

  1. A better description of the argument's purpose.
  2. A concrete example of how to use the argument (e.g., id=12345).
  3. Clearer context on when and why a user might need this argument.

These changes greatly enhance the usability of this CLI option by providing users with more actionable information.

1456-1458: Improved readability of help text.

A line break has been added to the help text for the --log-handler-script argument. This minor formatting change enhances the readability of the documentation by visually separating different parts of the explanation. While it doesn't affect functionality, it improves the overall clarity of the CLI documentation.

1463-1465: Consistent improvement in help text readability.

A line break has been added to the help text for the --log-service argument, mirroring the change made to the --log-handler-script argument. This minor formatting change enhances the readability of the documentation by visually separating different parts of the explanation. While it doesn't affect functionality, it improves the overall clarity and consistency of the CLI documentation.

Line range hint 1-1465: Overall improvement in CLI documentation quality.

The changes in this file consistently enhance the quality of the CLI documentation:

  1. Added missing punctuation to improve grammatical correctness.
  2. Improved formatting with strategic line breaks for better readability.
  3. Rewrote the help text for --wms-monitor-arg to provide clearer guidance.

These changes align well with the PR objective of fixing missing spaces in CLI help text, and go beyond by addressing other aspects of documentation clarity. While no functional changes were made, these improvements will enhance the user experience by providing clearer and more professional documentation for Snakemake's CLI.

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sonarqubecloud bot commented Oct 16, 2024

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

@peterjc peterjc changed the title Fix missing spaces in CLI help text docs: Fix missing spaces in CLI help text Oct 16, 2024
johanneskoester
johanneskoester approved these changes Oct 17, 2024
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Thansk a lot!

@johanneskoester johanneskoester merged commit 6416c36 into snakemake:main Oct 17, 2024
@github-actions github-actions bot mentioned this pull request Oct 17, 2024
Merged
@peterjc peterjc deleted the patch-2 branch October 17, 2024 13:39
johanneskoester pushed a commit that referenced this pull request Oct 18, 2024
@github-actions
chore(main): release 8.23.2 (#3149)
9504bf4 
🤖 I have created a release *beep* *boop*
---


##
[8.23.2](v8.23.1...v8.23.2)
(2024-10-18)


### Bug Fixes

* ignore derived parameters when storing job metadata and inferring
rerun necessity of jobs (this gets rid of spurious triggers caused by
e.g. changed resources, threads, remote storage configuration)
([#3154](#3154))
([73ce212](73ce212))
* more robust handling of input metadata that avoids storing user or
typoe specific local paths, and properly handles pipe or service files
([#3150](#3150))
([756dc70](756dc70))


### Documentation

* Fix missing spaces in CLI help text
([#3146](#3146))
([6416c36](6416c36))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@coderabbitai coderabbitai bot mentioned this pull request Jun 23, 2025
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