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Description
Snakemake version
8.20.3
Describe the bug
Checking the rule info of a rule in a generated report.html fails if the rule contains declared pip dependencies.
Logs
Using the inspection console in Chrome I find the following error when trying to access the rule info of an affected rule:
https://react.dev/errors/31?invariant=31&args%5B%5D=object%20with%20keys%20%7Bpip%7D
Minimal example
environment.yaml:
name: env-name
channels:
- conda-forge
dependencies:
- python
- pip
- pip:
- cowsay
Snakefile:
rule say_hi:
conda: 'environment.yml'
output: 'hi.txt'
shell:
'python -m cowsay -t "Hello World" > {output}'
Command:
snakemake -c1 say_hi --use-conda
snakemake -c1 --report report.html
-> Open the report in Chrome, click on the rule say_hi -> page turns white
Additional context
My analysis is that the issue is that the pip section is nested while the react renderItems expects a flat list.
| renderSoftware() { | |
| let rule = rules[this.props.rule]; | |
| if (rule.conda_env) { | |
| return this.renderItems("Software", rule.conda_env.dependencies); | |
| } else { | |
| return []; | |
| } | |
| } |
I will try to fix this and make a PR shortly.
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