- closes #184 #2008 #2442 #2387 - Reworded the section headers so that it's clearer what concepts are being introduced. It should be a tutorial about snakemake concepts, not read mapping. - Added previous/next button (Note that I don't think that this can be done selectively for just the tutorial, and enables this for the whole page, but personally I don't mind having the buttons everywhere) - Moved around and reworded some parts to hopefully make things clearer - Applied the 'every sentence should be on its own line' rule from the docs guidelines ### Notes Going through the tutorial, I was a bit unsure about the config / input function section, because it doesn't seem very useful for this specific task? Snakemake was able to infer the path for each sample just fine in the previous step, and the 'improved' solution with input functions / config then actually requires the user to provide a complete path for each sample in the config again, as far as I understand. Am I missing something here, or can we maybe think of a more useful input function as an example? ### QC  * [ ] The PR contains a test case for the changes or the changes are already covered by an existing test case. * [x] The documentation (`docs/`) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).  ## Summary by CodeRabbit * **Documentation** * Enabled previous/next navigation links for easier browsing * Restructured and retitled tutorial and guide sections for clearer, task-oriented flow * Major rewrites across basics, advanced, and additional-features tutorials with clearer examples and stepwise guidance * Expanded benchmarking, modularization (working with multiple Snakefiles), Conda/isolation, wrapper, and wildcard-constraint guidance * Fixed formatting, punctuation, and end-of-file rendering for consistency * Added a legacy heading alias to improve anchor compatibility in docs  --------- Co-authored-by: Lea Evers <l.evers@yandex.com> Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de> Co-authored-by: Johannes Koester <johannes.koester@uni-due.de>

Tutorial wrapper example out of date #184

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