Paramspace: Hyphen in parameter name raises MissingInputError #1349
Description
Snakemake version
6.12.3
Describe the bug
Including a hyphen (-) in the column/parameter name in the dataframe used for parameter space exploration with the Paramspace helper raises MissingInputException. It is not clear that this is not allowed and the error is not helpful.
Logs
Output from running minimal example below.
MissingInputException in line 10 of /Users/pontus.hojer/analysis/BLR_Analysis/naibr_tuning/Snakefile:
Missing input files for rule all:
value-a~2.txt
value-a~1.txtMinimal example
from snakemake.utils import Paramspace
import pandas as pd
paramspace = Paramspace(pd.DataFrame([
{'value-a': 1},
{'value-a': 2},
]))
rule all:
input:
expand("{params}.txt", params=paramspace.instance_patterns)
rule a:
output:
f"{paramspace.wildcard_pattern}.txt"
params:
params = paramspace.instance
run:
with open(output[0], "w") as f:
for parameter, value in params.params.items():
print(parameter, value, file=f)
Additional context