test: add test to bash script to check params are set

mbhall88 · web-flow · commit fe9dc4e416da · 2024-11-06T22:49:43.000+10:00
diff --git a/tests/test_script/scripts/test.sh b/tests/test_script/scripts/test.sh
@@ -1,5 +1,7 @@
 #!/usr/bin/env bash
 
+test "${snakemake_params[string]}" = "foo"
+
 echo "The first input file is ${snakemake_input[0]}" > "${snakemake_output[0]}" 2> "${snakemake_log[0]}"
 echo "The named input file is ${snakemake_input[named]}" >> "${snakemake_output[0]}" 2>> "${snakemake_log[0]}"
 echo "The requested number of threads is ${snakemake[threads]}" >> "${snakemake_output[0]}" 2>> "${snakemake_log[0]}"
