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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 633

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 240 207

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 182 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 48 47

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 11

Repositories

Showing 10 of 65 repositories
  • snakemake-software-deployment-plugin-conda Public

    A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

    snakemake/snakemake-software-deployment-plugin-conda’s past year of commit activity
    Python 2 0 1 3 Updated Mar 10, 2026
  • snakemake-software-deployment-plugin-container Public

    Run snakemake within a rootless container

    snakemake/snakemake-software-deployment-plugin-container’s past year of commit activity
    Python 1 MIT 1 0 2 Updated Mar 10, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,720 MIT 633 1,183 (1 issue needs help) 116 Updated Mar 10, 2026
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 10, 2026
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 48 MIT 47 40 2 Updated Mar 10, 2026
  • snakemake-profiles Public

    The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster or compute environments. It is meant to complement the executor plugins, which are designed for specifying execution on general architectures such as SLURM, LSF, etc.

    snakemake/snakemake-profiles’s past year of commit activity
    0 MIT 1 1 0 Updated Mar 10, 2026
  • snakemake-interface-logger-plugins Public
    snakemake/snakemake-interface-logger-plugins’s past year of commit activity
    Python 8 MIT 2 2 3 Updated Mar 10, 2026
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Mar 10, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 37 MIT 11 5 1 Updated Mar 10, 2026
  • snakemake-storage-plugin-http Public

    Snakemake storage plugin for donwloading input files from HTTP(s).

    snakemake/snakemake-storage-plugin-http’s past year of commit activity
    Python 1 MIT 4 5 5 Updated Mar 9, 2026
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