-
-
Notifications
You must be signed in to change notification settings - Fork 2.4k
lookfor is broken with cython == 0.29.0 #3475
Copy link
Copy link
Closed
Labels
🔍 MonitorDepends on an external condition(s); monitor itDepends on an external condition(s); monitor it
Milestone
Description
Description
lookfor seems to be broken on travis.
See failures on PR #3472
I can reproduce this on my machine with pip. Seems to be potentially related to Cython
@jni found
$ pytest --pdb --doctest-modules skimage/util/lookfor.py
==================================================================================================================== test session starts =====================================================================================================================
platform linux -- Python 3.6.3, pytest-3.5.1, py-1.5.3, pluggy-0.6.0
rootdir: /home/jni/projects/scikit-image/skimage, inifile:
plugins: cov-2.5.1, hypothesis-3.56.9
collected 1 item
skimage/util/lookfor.py F
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> traceback >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
007
008 Parameters
009 ----------
010 what : str
011 Words to look for.
012
013 Examples
014 --------
015 >>> import skimage
016 >>> skimage.lookfor('regular_grid')
UNEXPECTED EXCEPTION: TypeError("'NoneType' object is not iterable",)
Traceback (most recent call last):
File "/home/jni/miniconda3/envs/cf/lib/python3.6/doctest.py", line 1330, in __run
compileflags, 1), test.globs)
File "<doctest skimage.util.lookfor.lookfor[1]>", line 1, in <module>
File "/home/jni/projects/scikit-image/skimage/util/lookfor.py", line 24, in lookfor
return np.lookfor(what, sys.modules[__name__.split('.')[0]])
File "/home/jni/miniconda3/envs/cf/lib/python3.6/site-packages/numpy/lib/utils.py", line 754, in lookfor
cache = _lookfor_generate_cache(module, import_modules, regenerate)
File "/home/jni/miniconda3/envs/cf/lib/python3.6/site-packages/numpy/lib/utils.py", line 906, in _lookfor_generate_cache
for pth in item.__path__:
TypeError: 'NoneType' object is not iterable
/home/jni/projects/scikit-image/skimage/util/lookfor.py:16: UnexpectedException
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> entering PDB >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
> /home/jni/miniconda3/envs/cf/lib/python3.6/site-packages/numpy/lib/utils.py(906)_lookfor_generate_cache()
-> for pth in item.__path__:
(Pdb) p item
<module 'skimage._shared.geometry' from '/home/jni/projects/scikit-image/skimage/_shared/geometry.cpython-36m-x86_64-linux-gnu.so'>
(Pdb) p item.__dir__()
['__name__', '__doc__', '__package__', '__loader__', '__spec__', '__file__', '__path__', '__builtins__', '__pyx_capi__', '__test__']
(Pdb) item.__file__
'/home/jni/projects/scikit-image/skimage/_shared/geometry.cpython-36m-x86_64-linux-gnu.so'
(Pdb) list
901 except AttributeError:
902 _all = None
903
904 # import sub-packages
905 if import_modules and hasattr(item, '__path__'):
906 -> for pth in item.__path__:
907 for mod_path in os.listdir(pth):
908 this_py = os.path.join(pth, mod_path)
909 init_py = os.path.join(pth, mod_path, '__init__.py')
910 if (os.path.isfile(this_py) and
911 mod_path.endswith('.py')):
## TODO
- Remove version constraint in requirements/build.txt
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
🔍 MonitorDepends on an external condition(s); monitor itDepends on an external condition(s); monitor it