HBCD changes - [FEATURE REQUEST] - multiple functions - Helge Zöllner#424
Merged
HJZollner merged 1 commit intoschorschinho:developfrom Jun 8, 2022
Merged
HBCD changes - [FEATURE REQUEST] - multiple functions - Helge Zöllner#424HJZollner merged 1 commit intoschorschinho:developfrom
HJZollner merged 1 commit intoschorschinho:developfrom
Conversation
This commit includes numerous changes needed for the HBCD processing. See details below: - osp_fitInitialise.m had a wrong path for the GE HERCULES basis set - Fixed typo and wrong setup of the cell array for external segmentation files when .json files where used in OspreyJob.m - Changed the reference/reporter signal for the linewidth and SNR to creatine for all sequences with changes in op_get_Mutlispectra_LW,m, op_get_Multispectra_SNR.m, OspreyHTMLReport.m, OspreyMinReport.m, and OspreyProcess.m - Fixed a bug related to the linewidth calculation of creatine for HERMES/HERCULES data related to the included frequency range for the simple FWHM calculation - Added a quick summary to the HTML report showing quality measures (LW, SNR, fit residual), all fits, and localization + segmentation (if available) - Added segmentation based on anatomical labels. This works for HBCD atlas only
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This commit includes numerous changes needed for the HBCD processing. See details below:
osp_fitInitialise.m had a wrong path for the GE HERCULES basis set
Fixed typo and wrong setup of the cell array for external segmentation files when .json files where used in OspreyJob.m
Changed the reference/reporter signal for the linewidth and SNR to creatine for all sequences with changes in op_get_Mutlispectra_LW,m, op_get_Multispectra_SNR.m, OspreyHTMLReport.m, OspreyMinReport.m, and OspreyProcess.m
Fixed a bug related to the linewidth calculation of creatine for HERMES/HERCULES data related to the included frequency range for the simple FWHM calculation
Added a quick summary to the HTML report showing quality measures (LW, SNR, fit residual), all fits, and localization + segmentation (if available)
Added segmentation based on anatomical labels. This works for HBCD atlas only