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Unrooted coph#97

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Neclow wants to merge 5 commits intosbhattlab:mainfrom
Neclow:unrooted_coph
Closed

Unrooted coph#97
Neclow wants to merge 5 commits intosbhattlab:mainfrom
Neclow:unrooted_coph

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@Neclow Neclow commented Aug 7, 2025

Reinstate the "unrooted" option for cophenetic distances to match ete3. This might be useful for BME applications.

Note: comparing the "unrooted" option for phylo2vec with branch lengths requires a special kind of unrooting. ete3 simply deletes the first children that is not a leaf, while we remove the node with the largest label (which has to be a non-leaf for n_leaves > 2).

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Neclow commented Aug 7, 2025

superseded by #98

@Neclow Neclow closed this Aug 7, 2025
@Neclow Neclow deleted the unrooted_coph branch October 16, 2025 12:36
@Neclow Neclow restored the unrooted_coph branch October 16, 2025 12:37
@Neclow Neclow deleted the unrooted_coph branch October 16, 2025 13:02
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