feat: add Robinson-Foulds distance for tree comparison#179
Merged
Neclow merged 7 commits intosbhattlab:mainfrom Jan 26, 2026
Merged
feat: add Robinson-Foulds distance for tree comparison#179Neclow merged 7 commits intosbhattlab:mainfrom
Neclow merged 7 commits intosbhattlab:mainfrom
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Implement Robinson-Foulds distance computation across Rust, Python, and R: - Core algorithm in phylo2vec/src/vector/distances.rs using bipartition sets - Python wrapper in py-phylo2vec/phylo2vec/stats/treewise.py - R wrapper in r-phylo2vec/R/stats.R with extendr binding - Comprehensive tests validating against ete4 (Python) and TreeDist (R) - Optional normalization by maximum possible RF distance Add r-treedist as platform-specific dependency (linux-64, osx-64, win-64) for R test validation. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…o2vec into feat/robinson-foulds
Separate the Python version change from this PR to fix lock file sync. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
The function was incorrectly renamed during regeneration, breaking utils.R. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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Implement Robinson-Foulds distance computation across Rust, Python, and R:
Add r-treedist as platform-specific dependency (linux-64, osx-64, win-64) for R test validation.