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Update ete3 to ete4 + add support for Python 3.13#108

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Neclow merged 7 commits intosbhattlab:mainfrom
Neclow:update_ete
Sep 19, 2025
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Update ete3 to ete4 + add support for Python 3.13#108
Neclow merged 7 commits intosbhattlab:mainfrom
Neclow:update_ete

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@Neclow Neclow commented Sep 19, 2025

  • Update ete3 to ete4 in the python branch
    • Requires adding libxcrypt to the python deps
    • Allows us to add py3.13 to the Python CI
  • Use keyword arguments in the demo_opt demo to fix a bug in one of the GradME cells

@Neclow Neclow changed the title Update ete3 to ete4 Update ete3 to ete4 + add support for Python 3.13 Sep 19, 2025
@Neclow Neclow merged commit 4cd3612 into sbhattlab:main Sep 19, 2025
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@Neclow Neclow deleted the update_ete branch September 19, 2025 15:53
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