I like to review the methods used in pathology research to improve the modules.
This week I will be focusing on USCAP abstracts. I am sure it will be a long review.
Until I find something worth adding to the modules I have prepared a test module for the work in progress functions. This group contains Lasso Cox related survival features in detail.
Add comments and requests here: https://github.com/sbalci/ClinicoPathJamoviModule/issues
PR are welcome.
Current test module can be got from:
https://github.com/sbalci/ClinicoPathJamoviModule/releases/tag/v0.0.37.07
https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.37.07/JamoviTest_0.0.0-win.jmo
https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.37.07/JamoviTest_0.0.0-mac.jmo

ClinicoPathDescriptives

Code:
https://github.com/sbalci/ClinicoPathDescriptives/releases/tag/v0.0.32
sbalci/ClinicoPathDescriptives@5409230
https://github.com/sbalci/ClinicoPathDescriptives/tree/v0.0.32
Binaries:
Mac: https://github.com/sbalci/ClinicoPathDescriptives/releases/download/v0.0.32/ClinicoPathDescriptives_0.0.32-mac.jmo
Win: https://github.com/sbalci/ClinicoPathDescriptives/releases/download/v0.0.32/ClinicoPathDescriptives_0.0.32-win.jmo

jsurvival

Code:
https://github.com/sbalci/jsurvival/releases/tag/v0.0.32
sbalci/jsurvival@9b89ce4
https://github.com/sbalci/jsurvival/tree/v0.0.32
Binaries:
Mac: https://github.com/sbalci/jsurvival/releases/download/v0.0.32/jsurvival_0.0.32-mac.jmo
Win: https://github.com/sbalci/jsurvival/releases/download/v0.0.32/jsurvival_0.0.32-win.jmo

meddecide

Code:
https://github.com/sbalci/meddecide/releases/tag/v0.0.32
sbalci/meddecide@44ae665
https://github.com/sbalci/meddecide/tree/v0.0.32
Binaries:
Mac: https://github.com/sbalci/meddecide/releases/download/v0.0.32/meddecide_0.0.32-mac.jmo
Win: https://github.com/sbalci/meddecide/releases/download/v0.0.32/meddecide_0.0.32-win.jmo

jjstatsplot

Code:
https://github.com/sbalci/jjstatsplot/releases/tag/v0.0.32
sbalci/jjstatsplot@8ed2ed5
https://github.com/sbalci/jjstatsplot/tree/v0.0.32
Binaries:
Mac: https://github.com/sbalci/jjstatsplot/releases/download/v0.0.32/jjstatsplot_0.0.32-mac.jmo
Win: https://github.com/sbalci/jjstatsplot/releases/download/v0.0.32/jjstatsplot_0.0.32-win.jmo

OncoPath

Code:
https://github.com/sbalci/OncoPath/releases/tag/v0.0.32
sbalci/OncoPath@fb98947
https://github.com/sbalci/OncoPath/tree/v0.0.32
Binaries:
Mac: https://github.com/sbalci/OncoPath/releases/download/v0.0.32/OncoPath_0.0.32-mac.jmo
Win: https://github.com/sbalci/OncoPath/releases/download/v0.0.32/OncoPath_0.0.32-win.jmo

these are partially working drafts to be tested by users. not to be used in research.

Only drafts

https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.31.48/ClinicoPath_JamoviTest_0.0.0-mac.jmo

https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.31.48/ClinicoPath_JamoviTest_0.0.0-win.jmo

test function chi square posthoc
https://forum.jamovi.org/viewtopic.php?t=4003
You can download .jmo files and use sideload to use the module.
Windows: https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.3.91test/JamoviTest_0.0.0-win.jmo
Mac: https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.3.91test/JamoviTest_0.0.0-mac.jmo
Sideload:
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif

• now we can use more than one dependent variables
• the image sizes are optimized

GGStatsPlot functions are separately added to jamovi library under jjstatsplot menu

JJStastPlot module can be downloaded inside jamovi (click Modules and jamovi library)

https://library.jamovi.org/win64/R3.6.3/jjstatsplot-0.0.2.0038.jmo

https://library.jamovi.org/linux/R3.6.3/jjstatsplot-0.0.2.0038.jmo

https://library.jamovi.org/macos/R3.6.3/jjstatsplot-0.0.2.0038.jmo

https://github.com/sbalci/jjstatsplot

https://github.com/sbalci/jjstatsplot/releases/

ClinicoPath 0.0.2.0019

• rewrote summary of categorical values to decrease dependencies

ClinicoPath 0.0.2.0018

• added cumulative events and cumulative hazard plots to survival

https://rpkgs.datanovia.com/survminer/survminer_cheatsheet.pdf

• added cox adjusted survival to multivariate survival

ClinicoPath 0.0.2.0017

• added alluvial diagrams using easyalluvial package to Descriptives (under
  Explore menu)
  #19
  erblast/easyalluvial#19

• added easyalluvial as an option to Graphs and Plots (under JJStatsPlot menu)
  for repeated categorical measurements.

ClinicoPath 0.0.2.0016

• See: https://github.com/sbalci/jjstatsplot/releases/

• See: https://github.com/sbalci/ClinicoPath/releases/

• crosstable function partially resolves jamovi/jamovi#443

• survival function resolves jonathon-love/deathwatch#2

• added export html to crosstables to bypass jamovi/jamovi#892