I created and saved a small net, then tried to reload it. PIPE through an exception input processing.

bash-3.2$
bash-3.2$ 2015-10-27 10:27:28.281 java[1067:59175] plugin com.google.GoogleDrive.FinderSyncAPIExtension invalidated
2015-10-27 10:27:28.281 java[1067:58860] plugin com.getdropbox.dropbox.garcon invalidated
Oct 27, 2015 10:27:28 AM com.sun.xml.internal.bind.v2.util.XmlFactory createParserFactory
SEVERE: null
org.xml.sax.SAXNotRecognizedException: http://javax.xml.XMLConstants/feature/secure-processing
at org.apache.xerces.parsers.AbstractSAXParser.setFeature(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl.setFeatures(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl.(Unknown Source)
at org.apache.xerces.jaxp.SAXParserFactoryImpl.newSAXParserImpl(Unknown Source)
at org.apache.xerces.jaxp.SAXParserFactoryImpl.setFeature(Unknown Source)
at com.sun.xml.internal.bind.v2.util.XmlFactory.createParserFactory(XmlFactory.java:114)
at com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallerImpl.getXMLReader(UnmarshallerImpl.java:139)
at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(AbstractUnmarshallerImpl.java:157)
at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(AbstractUnmarshallerImpl.java:214)
at uk.ac.imperial.pipe.io.PetriNetIOImpl.read(PetriNetIOImpl.java:138)
at uk.ac.imperial.pipe.models.manager.PetriNetManagerImpl.createFromFile(PetriNetManagerImpl.java:96)
at pipe.controllers.application.PipeApplicationController.createNewTabFromFile(PipeApplicationController.java:168)
at pipe.actions.gui.OpenAction.actionPerformed(OpenAction.java:51)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Exception in thread "AWT-EventQueue-0" java.lang.IllegalStateException: org.xml.sax.SAXNotRecognizedException: http://javax.xml.XMLConstants/feature/secure-processing
at com.sun.xml.internal.bind.v2.util.XmlFactory.createParserFactory(XmlFactory.java:121)
at com.sun.xml.internal.bind.v2.runtime.unmarshaller.UnmarshallerImpl.getXMLReader(UnmarshallerImpl.java:139)
at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(AbstractUnmarshallerImpl.java:157)
at javax.xml.bind.helpers.AbstractUnmarshallerImpl.unmarshal(AbstractUnmarshallerImpl.java:214)
at uk.ac.imperial.pipe.io.PetriNetIOImpl.read(PetriNetIOImpl.java:138)
at uk.ac.imperial.pipe.models.manager.PetriNetManagerImpl.createFromFile(PetriNetManagerImpl.java:96)
at pipe.controllers.application.PipeApplicationController.createNewTabFromFile(PipeApplicationController.java:168)
at pipe.actions.gui.OpenAction.actionPerformed(OpenAction.java:51)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: org.xml.sax.SAXNotRecognizedException: http://javax.xml.XMLConstants/feature/secure-processing
at org.apache.xerces.parsers.AbstractSAXParser.setFeature(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl.setFeatures(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl.(Unknown Source)
at org.apache.xerces.jaxp.SAXParserFactoryImpl.newSAXParserImpl(Unknown Source)
at org.apache.xerces.jaxp.SAXParserFactoryImpl.setFeature(Unknown Source)
at com.sun.xml.internal.bind.v2.util.XmlFactory.createParserFactory(XmlFactory.java:114)
... 47 more