Skip to content

Add a link to samtools.1 manpage for global opts in usage.#2258

Merged
vasudeva8 merged 1 commit into
samtools:developfrom
jkbonfield:doc-global-opts
Sep 15, 2025
Merged

Add a link to samtools.1 manpage for global opts in usage.#2258
vasudeva8 merged 1 commit into
samtools:developfrom
jkbonfield:doc-global-opts

Conversation

@jkbonfield

Copy link
Copy Markdown
Contributor

Addresses issue raised in #2236 with a pointer to where to find the list of acceptable input-fmt-option and output-fmt-option keywords. Many people don't think to look at the global samtools.1 man-page for such things. Arguably we should edit every manpage too referring back to this, but this is an easy and more discoverable fix.

Addresses issue raised in samtools#2236 with a pointer to where to find the
list of acceptable input-fmt-option and output-fmt-option keywords.
Many people don't think to look at the global samtools.1 man-page for
such things.  Arguably we should edit every manpage too referring back
to this, but this is an easy and more discoverable fix.
@vasudeva8 vasudeva8 merged commit fd3599b into samtools:develop Sep 15, 2025
6 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants