Add samtools consensus -T ref.fa functionality.#2153
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If the consensus cannot be derived due to no coverage or low depth, report the reference instead (if supplied). Also a minor optimisation to the code to avoid 0 sized =memcpy/memset.
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If the consensus cannot be derived due to no coverage or low depth, report the reference instead (if supplied).
Also a minor optimisation to the code to avoid 0-sized memcpy/memset.
Fixes additional requests added to #1915